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GitHub topics: pangenome-inference

SWittouck/SCARAP

A toolkit for prokaryotic comparative genomics

Language: Python - Size: 238 KB - Last synced at: 18 days ago - Pushed at: 4 months ago - Stars: 47 - Forks: 6

FarhanaRiaz123/Pangenome-Analysis

Pangenome-Analysis.py is written for extraction of core, accessory and unique genomes (Gene families and proteins) along with filtration of single copy orthologues, creation of binary and count matrices as well as removal of duplicates.

Language: Python - Size: 4.88 KB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 0

Related Keywords
pangenome-inference 2 pangenome-pipeline 2 singletons 1 proteome-clustering 1 plasmodium 1 pangenome 1 orthomcl 1 gene-family 1 gene-families 1 duplicates-removal 1 downstream-analysis 1 count-matrix 1 coregenome 1 clustering 1 biology 1 bioinformatics-analysis 1 bioinformatics 1 binary-matrix 1 annotation 1 accessory-genes 1 comparative-genomics 1