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GitHub / showteeth / DEbPeak
DEbPeak - Analyze and integrate multi-omics to unravel the regulation of gene expression.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/showteeth%2FDEbPeak
Stars: 8
Forks: 1
Open Issues: 1
License: other
Language: HTML
Repo Size: 94.4 MB
Dependencies:
66
Created: almost 2 years ago
Updated: 7 months ago
Last pushed: 6 months ago
Last synced: 3 months ago
Topics: analysis, atac-seq, chip-seq, count-matrix, differential-expression, geo, integration, m6a-seq, peak-related, rna-seq, transcription-factors, visualization
Files
Dependencies
- R >= 4.0.0 depends
- AnnotationDbi * imports
- Biobase * imports
- BiocManager * imports
- BiocParallel * imports
- ChIPseeker * imports
- ComplexHeatmap * imports
- DEFormats * imports
- DESeq2 * imports
- DiffBind * imports
- GEOquery * imports
- GenomeInfoDb * imports
- GenomicFeatures * imports
- GenomicRanges * imports
- IRanges * imports
- NOISeq * imports
- PCAtools * imports
- RColorBrewer * imports
- SummarizedExperiment * imports
- TFEA.ChIP * imports
- circlize * imports
- clusterProfiler >= 3.18.1 imports
- cowplot * imports
- data.table * imports
- dplyr * imports
- edgeR * imports
- enrichplot * imports
- ggnetwork * imports
- ggpie * imports
- ggplot2 * imports
- ggplotify * imports
- ggpubr * imports
- ggrepel * imports
- ggupset * imports
- ggvenn * imports
- grDevices * imports
- graphics * imports
- grid * imports
- httr * imports
- igraph * imports
- jsonlite * imports
- magrittr * imports
- matrixStats * imports
- openxlsx * imports
- parallel * imports
- patchwork * imports
- plot3D * imports
- purrr * imports
- reshape2 * imports
- rlang * imports
- rrcov * imports
- scales * imports
- stats * imports
- stringr * imports
- sva * imports
- tibble * imports
- tidyr * imports
- tools * imports
- utils * imports
- viridis * imports
- BiocStyle * suggests
- airway * suggests
- htmltools * suggests
- knitr * suggests
- msigdbr * suggests
- rmarkdown * suggests