Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: cran: enrichplot

View more package details: https://packages.ecosyste.ms/registries/cran.r-project.org/packages/enrichplot

Dependent Repos 38

YuLab-SMU/clusterProfiler
:bar_chart: A universal enrichment tool for interpreting omics data
  • >= 1.9.3 DESCRIPTION

Size: 15.1 MB - Last synced: 8 days ago - Pushed: 9 days ago

UMMS-Biocore/debrowser
Differential Count Data Analysis Toolbox
  • * DESCRIPTION

Size: 38.7 MB - Last synced: 17 days ago - Pushed: 4 months ago

rseng/rsepedia-analysis
Exploring clustering of research software encyclopedia entries
  • * _repos/github/JSB-UCLA/scPNMF/DESCRIPTION

Size: 435 MB - Last synced: 8 days ago - Pushed: 8 days ago

hbc/bcbioRNASeq
R package for bcbio RNA-seq analysis.
  • * DESCRIPTION

Size: 318 MB - Last synced: about 1 month ago - Pushed: about 2 months ago

TeamMacLean/mogo
R package for easy GO analysis of M.oryzae gene lists.
  • * DESCRIPTION

Size: 4.02 MB - Last synced: about 2 months ago - Pushed: about 1 year ago

t-arae/ngsmisc
  • * DESCRIPTION

Size: 185 KB - Last synced: 4 months ago - Pushed: 4 months ago

BimberLab/geneSetVis
gene-set enrichment visualization.
  • * DESCRIPTION

Size: 84.7 MB - Last synced: about 1 month ago - Pushed: over 2 years ago

ok-gitr/geneSetVis
gene-set enrichment visualization.
  • * DESCRIPTION

Size: 84.8 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

noriakis/CBNplot
Bayesian network plot for the enrichment analysis results
  • * DESCRIPTION

Size: 1.59 MB - Last synced: 16 days ago - Pushed: about 2 months ago

Huising-Lab/epiRomics
An R package designed to integrate and visualize various levels of epigenomic information, including but not limited to: ChIP, Histone, ATAC, and RNA sequencing. epiRomics is also designed to identify enhancer and enhanceosome regions from these data.
  • * DESCRIPTION

Size: 32.6 MB - Last synced: 6 months ago - Pushed: 6 months ago

gsx-ucas/QRAP
An R package for analysing RNA-seq Data based shiny
  • >= 1.10.0 DESCRIPTION

Size: 290 MB - Last synced: 3 months ago - Pushed: 11 months ago

cbg-ethz/pareg
Pathway enrichment computations using a regularized regression approach to incorporate inter-pathway relations in the statistical model.
  • * DESCRIPTION

Size: 19.5 MB - Last synced: 2 days ago - Pushed: 11 months ago

PNNL-Comp-Mass-Spec/MSnSet.utils Fork of vladpetyuk/vp.misc
custom wrappers of frequently used R code
  • * DESCRIPTION

Size: 65.9 MB - Last synced: 3 days ago - Pushed: 3 days ago

cnrgh/pintmf
  • * DESCRIPTION

Last synced: over 1 year ago

NurSyatila/DAGItoolsr
Implements methods to identify and analyse disease-associated genes. Several options are available: (1) gene search from databases, and (2) gene search from differential expression data. It also provides options to predict protein-protein interaction (via STRINGdb) and perform functional enrichment (via clusterProfiler).
  • >= 1.16.2 DESCRIPTION

Size: 185 KB - Last synced: 7 months ago - Pushed: over 1 year ago

huerqiang/clusterProfiler Fork of YuLab-SMU/clusterProfiler
:bar_chart: statistical analysis and visualization of functional profiles for genes and gene clusters
  • >= 1.9.3 DESCRIPTION

Size: 15 MB - Last synced: 8 months ago - Pushed: 8 months ago

mpierrejean/pintmf
  • * DESCRIPTION

Size: 15.7 MB - Last synced: 2 months ago - Pushed: over 1 year ago

YuLab-SMU/meshes
:stethoscope: MeSH Enrichment and Semantic analyses
  • * DESCRIPTION

Size: 1.71 MB - Last synced: 8 days ago - Pushed: 9 days ago

ShellyCoder/cellcall
inferring cell-cell communication from scRNA-seq of ligand-receptor
  • >= 1.6.1 DESCRIPTION

Size: 16.4 MB - Last synced: 3 months ago - Pushed: 8 months ago

kharchenkolab/cacoa
Single-cell Case Control Analysis
  • * DESCRIPTION

Size: 5.59 MB - Last synced: 3 months ago - Pushed: 3 months ago

WubingZhang/MAGeCKFlute
Integrative analysis pipeline for pooled CRISPR functional genetic screens
  • * DESCRIPTION

Size: 228 MB - Last synced: 4 months ago - Pushed: 5 months ago

YuLab-SMU/ReactomePA
Reactome Pathway Analysis
  • * DESCRIPTION

Size: 5.47 MB - Last synced: 8 days ago - Pushed: 9 days ago

paulklemm/mygo
Create Report for mus musculus dataset of GO-term analysis using clusterProfiler
  • * DESCRIPTION

Size: 125 KB - Last synced: about 1 month ago - Pushed: 11 months ago

sk-sahu/sig-bio-shiny
A standalone interactive application for detecting biological significance on a set of genes
  • >= 1.7.1 DESCRIPTION

Size: 4.56 MB - Last synced: 3 months ago - Pushed: about 3 years ago

YuLab-SMU/MicrobiomeProfiler
:microbe: A shiny package for microbiome functional enrichment analysis
  • * DESCRIPTION

Size: 12.1 MB - Last synced: 8 days ago - Pushed: 9 days ago

swcyo/GSEAbar
Barplot for GSEA result
  • * DESCRIPTION

Size: 445 KB - Last synced: 5 months ago - Pushed: over 1 year ago

satishgaurav/discoverapp_rubiustx
  • >= 0.99.7 packrat/lib/x86_64-pc-linux-gnu/3.6.3/clusterProfiler/DESCRIPTION

Size: 817 MB - Last synced: over 1 year ago

marseille-proteomique/mineCETSAapp Fork of mgerault/IMPRINTS.CETSA.app
Interactive shiny app for mineCETSA package, allowing you to analyze MS-CETSA data.
  • * DESCRIPTION

Size: 58.6 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

mjoppich/PLOSC
Plots and Scripts for scRNA-seq analysis
  • * DESCRIPTION

Size: 2.32 MB - Last synced: 2 months ago - Pushed: 2 months ago

ndreey/luandre
BI503G R-package
  • * DESCRIPTION

Size: 2.34 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

YuLab-SMU/ChIPseeker
:dart: ChIP peak Annotation, Comparison and Visualization
  • * DESCRIPTION

Size: 22.9 MB - Last synced: 8 days ago - Pushed: 9 days ago

jmw86069/multienrichjam
Analysis and Visualization of Multiple Gene Set Enrichments
  • * DESCRIPTION

Size: 99.8 MB - Last synced: 7 days ago - Pushed: 7 days ago

MingLi-929/ChIPseeker Fork of YuLab-SMU/ChIPseeker
:dart: ChIP peak Annotation, Comparison and Visualization
  • * DESCRIPTION

Size: 22.9 MB - Last synced: 5 months ago - Pushed: 5 months ago

huerqiang/GeoTcgaData Fork of YuLab-SMU/GeoTcgaData
Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA
  • * DESCRIPTION

Size: 17.2 MB - Last synced: 8 months ago - Pushed: 8 months ago

seoanezonjic/ExpHunterSuite Fork of Isabelggayte/DEgenesHunter
RNA-seq gene expression analysis suite
  • * DESCRIPTION

Size: 93.6 MB - Last synced: 7 days ago - Pushed: 7 days ago

abelew/hpgltools Fork of elsayed-lab/hpgltools
A collection of R functions to aid in host-pathogen genomic research
  • * DESCRIPTION

Size: 553 MB - Last synced: 3 days ago - Pushed: 4 days ago

AudreyBeaufils/DAFE
Cette application Rshiny est capale de réaliser l'analyse différentielle et enrichissement fonctionnelle
  • * DESCRIPTION

Size: 188 KB - Last synced: 8 months ago - Pushed: 8 months ago

belleau/enrichViewNet Fork of adeschen/enrichViewNet
From functional enrichment results to biological networks
  • * DESCRIPTION

Size: 5.28 MB - Last synced: 7 months ago - Pushed: 7 months ago

TeamMacLean/osgo
package for basic GO analysis of O.sativa
  • * DESCRIPTION

Size: 7.66 MB - Last synced: about 2 months ago - Pushed: over 1 year ago

reese3928/methylGSA
A Bioconductor package and shiny app for DNA methylation data length bias adjustment in gene set testing
  • * DESCRIPTION

Size: 7.06 MB - Last synced: 28 days ago - Pushed: about 3 years ago

cparsania/parcutils
An R package containing bioinformatics utility functions. Mostly related to RNAseq data analysis
  • * DESCRIPTION

Size: 101 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

cparsania/FungiExpresZ
An R-shiny package to analyse and visualise fungal gene expression data
  • >= 1.4.0 DESCRIPTION

Size: 335 MB - Last synced: 2 months ago - Pushed: 2 months ago

Yutong441/TBdev
Infer trophoblast trajectory using single cell RNA sequencing
  • * DESCRIPTION

Size: 1.11 MB - Last synced: 10 months ago - Pushed: over 2 years ago

SiYangming/tidyToy
  • * DESCRIPTION

Size: 35.1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

Kan-E/rnaseqviewer
R package for automated, systematic, and integrated RNA-seq differential expression analysis
  • >= 0.10.2 DESCRIPTION

Size: 3.84 MB - Last synced: 7 months ago - Pushed: about 2 years ago

xiayh17/RNAseqStat2
  • * DESCRIPTION

Size: 503 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

xiayh17/RNAseqStat
A Pipeline to Process RNAseq Data
  • * DESCRIPTION

Size: 158 MB - Last synced: 7 months ago - Pushed: almost 2 years ago

lea-rothoerl/DeeDee
  • * DESCRIPTION

Size: 7.1 MB - Last synced: 8 months ago - Pushed: 8 months ago

nephantes/debrowser_bioconductor_release
  • * DESCRIPTION

Size: 7.58 MB - Last synced: about 1 year ago - Pushed: almost 6 years ago

hiddenntreasure/comorbidity
SSc and its cancer comorbidity
  • >= 1.9.3 clusterprofiler/DESCRIPTION

Size: 7.74 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

noriakis/CBNplotTest
  • * DESCRIPTION

Size: 271 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

altairwei/brookite
Useful bioinformatics tools for R.
  • * DESCRIPTION

Size: 43 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

dming1024/TCGADependencies
Installation of R packages
  • * DESCRIPTION

Size: 2.93 KB - Last synced: about 1 year ago - Pushed: over 2 years ago

noriakis/cpbnplot
Bayesian network plot for the enrichment analysis results
  • * DESCRIPTION

Size: 1.33 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

Bishop-Laboratory/correlationAnalyzeR
Generate Novel Insights from Gene Correlation Data
  • * DESCRIPTION

Size: 86.1 MB - Last synced: 8 days ago - Pushed: almost 2 years ago

saisaitian/TCMR
  • * DESCRIPTION

Size: 536 MB - Last synced: 10 months ago - Pushed: over 1 year ago

vari-bbc/bbcRNA
bbcRNA: An R package for facilitating RNA-Seq analysis
  • >= 1.4 DESCRIPTION

Size: 6.92 MB - Last synced: 11 months ago - Pushed: over 1 year ago

ComputationalProteomics/FusariumResponseInOatMethods
Interactive interface for study of Fusarium infection in oat
  • * DESCRIPTION

Size: 84 KB - Last synced: 5 days ago - Pushed: over 4 years ago

Christian-Heyer/cacoa Fork of kharchenkolab/cacoa
Single-cell Case Control Analysis
  • * DESCRIPTION

Size: 5.69 MB - Last synced: 11 months ago - Pushed: over 2 years ago

waldronlab/BugSigDBPaper
Figures and Tables for the BugSigDB paper
  • * DESCRIPTION

Size: 32.2 KB - Last synced: 7 months ago - Pushed: 7 months ago

GenomicsNX/debrowser Fork of UMMS-Biocore/debrowser
Differential Count Data Analysis Toolbox
  • * DESCRIPTION

Size: 23.3 MB - Last synced: about 2 months ago - Pushed: almost 2 years ago

bioc/clusterProfiler
This is a read-only mirror of the git repos at https://bioconductor.org
  • >= 1.9.3 DESCRIPTION

Size: 15.2 MB - Last synced: 22 days ago - Pushed: 22 days ago

bioc/multiSight
This is a read-only mirror of the git repos at https://bioconductor.org
  • * DESCRIPTION

Size: 3.23 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

cran/TOmicsVis
:exclamation: This is a read-only mirror of the CRAN R package repository. TOmicsVis — Transcriptome Visualization Process Scheme. Homepage: https://benben-miao.github.io/TOmicsVis/ Report bugs for this package: https://github.com/benben-miao/TOmicsVis/issues/
  • * DESCRIPTION

Size: 7.67 MB - Last synced: 9 months ago - Pushed: 9 months ago

eleonore-schneeg/Omix
A Transcriptomics-Proteomics Integration Pipeline
  • * DESCRIPTION

Size: 73.4 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

HasiHays/cellcall Fork of ShellyCoder/cellcall
inferring cell-cell communication from scRNA-seq of ligand-receptor
  • >= 1.6.1 DESCRIPTION

Size: 16.4 MB - Last synced: 10 months ago - Pushed: over 1 year ago

bioc/debrowser
This is a read-only mirror of the git repos at https://bioconductor.org
  • * DESCRIPTION

Size: 23.7 MB - Last synced: 22 days ago - Pushed: 22 days ago

tzhu-bio/ChIPseeker Fork of YuLab-SMU/ChIPseeker
:dart: ChIP peak Annotation, Comparison and Visualization
  • * DESCRIPTION

Size: 22.9 MB - Last synced: 10 months ago - Pushed: about 1 year ago

vjcitn/pareg Fork of cbg-ethz/pareg
Pathway enrichment computations using a regularized regression approach to incorporate inter-pathway relations in the statistical model.
  • * DESCRIPTION

Size: 19.5 MB - Last synced: 12 days ago - Pushed: 11 months ago

UEFBiomedicalInformaticsLab/ThETA
ThETA: Transcriptome-driven Efficacy estimates for gene-based TArget discovery
  • * DESCRIPTION

Size: 43.1 MB - Last synced: 7 months ago - Pushed: about 3 years ago

MingLi-929/clusterProfiler Fork of YuLab-SMU/clusterProfiler
:bar_chart: A universal enrichment tool for interpreting omics data
  • >= 1.9.3 DESCRIPTION

Size: 14.4 MB - Last synced: 9 months ago - Pushed: over 2 years ago

Clearmind777/clusterProfiler Fork of YuLab-SMU/clusterProfiler
:bar_chart: A universal enrichment tool for interpreting omics data
  • >= 1.9.3 DESCRIPTION

Size: 15.1 MB - Last synced: 4 months ago - Pushed: 5 months ago

christensensm/COMPOSE
A set of R functions to augment analysis of CRISPR-related phenotypic screens
  • >= 1.2.0 DESCRIPTION

Size: 350 KB - Last synced: 9 months ago - Pushed: over 3 years ago

YinpuLi/multienrichjam Fork of jmw86069/multienrichjam
Analysis and Visualization of Multiple Gene Set Enrichments
  • * DESCRIPTION

Size: 43 MB - Last synced: 8 months ago - Pushed: about 2 years ago

TangLi025/ttFunctions
  • * DESCRIPTION

Size: 9.77 KB - Last synced: 8 months ago - Pushed: about 1 year ago

amcassano/RNAseqAnalysisPackage
Package with functions to help with the DESeq2 based analysis of RNA seq data
  • * DESCRIPTION

Size: 44.7 MB - Last synced: about 16 hours ago - Pushed: about 17 hours ago

atuldeshpande/SpaceMarkers Fork of DeshpandeLab/SpaceMarkers
An R/Bioconductor software tool to identify genes associated with latent space interactions in spatial transcriptomics.
  • * DESCRIPTION

Size: 22.5 MB - Last synced: 3 days ago - Pushed: 4 days ago

cran/SCpubr
:exclamation: This is a read-only mirror of the CRAN R package repository. SCpubr — Generate Publication Ready Visualizations of Single Cell Transcriptomics Data. Homepage: https://github.com/enblacar/SCpubr/, https://enblacar.github.io/SCpubr-book/ Report bugs for this package: https://github.com/enblacar/SCpubr/iss ...
  • * DESCRIPTION

Size: 3.32 MB - Last synced: 7 months ago - Pushed: 8 months ago

AlexanderPico/clusterProfiler Fork of YuLab-SMU/clusterProfiler
:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters
  • >= 1.9.3 DESCRIPTION

Size: 15 MB - Last synced: 7 months ago - Pushed: 7 months ago

benben-miao/TOmicsVis
Transcriptomics Visualization R package.
  • * DESCRIPTION

Size: 198 MB - Last synced: 13 days ago - Pushed: 4 months ago

fallerlab/ARF
Differential Ribosomal heterogeneity Prediction through Ribosome Profiling generated rRNA fragments and their Proximity to Ribosomal Proteins
  • * DESCRIPTION

Size: 144 MB - Last synced: 6 months ago - Pushed: 6 months ago

hamamoto-lab/methPLIER
R package for DNA methylation data analysis using NMF with sparse regularization
  • >= 1.18.4 DESCRIPTION

Size: 158 MB - Last synced: about 1 month ago - Pushed: 6 months ago

paodan/plotTools
  • * DESCRIPTION

Size: 64.5 KB - Last synced: 6 months ago - Pushed: 6 months ago

wdb-web/pathwayss
  • * DESCRIPTION

Size: 1.61 MB - Last synced: 6 months ago - Pushed: about 2 years ago

wdb-web/pathways_help
  • * DESCRIPTION

Size: 3.73 MB - Last synced: 6 months ago - Pushed: over 1 year ago

showteeth/DEbPeak
DEbPeak - Analyze and integrate multi-omics to unravel the regulation of gene expression.
  • * DESCRIPTION

Size: 94.4 MB - Last synced: 3 months ago - Pushed: 5 months ago

cran/ReporterScore
:exclamation: This is a read-only mirror of the CRAN R package repository. ReporterScore — Generalized Reporter Score-Based Enrichment Analysis for Omics Data. Homepage: https://github.com/Asa12138/ReporterScore Report bugs for this package: https://github.com/Asa12138/ReporterScore/issues
  • * DESCRIPTION

Size: 3.02 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

aicplane/Linkage
An R shiny web server for linking of ATAC-seq to gene expression data
  • * DESCRIPTION

Size: 385 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

NYUAD-Core-Bioinformatics/Nasqar2
  • * debrowser-master/DESCRIPTION

Size: 21.6 MB - Last synced: about 1 month ago - Pushed: about 2 months ago

bioc/ExpHunterSuite
This is a read-only mirror of the git repos at https://bioconductor.org
  • * DESCRIPTION

Size: 93.3 MB - Last synced: 19 days ago - Pushed: 19 days ago

liubingdong/EasyMultiProfiler
The EasyMultiProfiler package aims to offer a user-friendly and efficient multi-omics data analysis tool on the R platform. It facilitates various essential tasks related to microbiome, genome, and metabolite downstream analysis, providing a seamless workflow from start to finish.
  • * DESCRIPTION

Size: 38.4 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

genejockey33000/typGumbo
A collection of internal scripts for RNAseq and Proteomic processing in the Young-Pearse lab.
  • * DESCRIPTION

Size: 2.96 MB - Last synced: 10 months ago - Pushed: 10 months ago

bioc/enrichViewNet
This is a read-only mirror of the git repos at https://bioconductor.org
  • * DESCRIPTION

Size: 6.61 MB - Last synced: 22 days ago - Pushed: 22 days ago

zisanurrahman/YuLab-SMU_MicrobiomeProfiler
  • * DESCRIPTION

Size: 11.3 MB - Last synced: 26 days ago - Pushed: over 1 year ago

bioc/ChIPseeker
This is a read-only mirror of the git repos at https://bioconductor.org
  • * DESCRIPTION

Size: 22.9 MB - Last synced: 8 days ago - Pushed: 8 days ago

jokergoo/GSEAtraining
  • * DESCRIPTION

Size: 77 MB - Last synced: 14 days ago - Pushed: 4 months ago

ijpb-bioinformatics/RFLOMICS
  • * DESCRIPTION

Size: 57.9 MB - Last synced: 10 days ago - Pushed: 10 days ago

ISGLOBAL-Rakislova-Lab/HTGAnalizer
This repository contains a package for analyzing gene expression and GSEA in HTG transcriptomic panel samples. It offers intuitive QC, DGEA tools and GSE analysis.
  • * DESCRIPTION

Size: 82 KB - Last synced: 1 day ago - Pushed: 1 day ago