Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
Package Usage: cran: enrichplot
View more package details: https://packages.ecosyste.ms/registries/cran.r-project.org/packages/enrichplot
Dependent Repos 38
YuLab-SMU/clusterProfiler
:bar_chart: A universal enrichment tool for interpreting omics data- >= 1.9.3 DESCRIPTION
Size: 15.1 MB - Last synced: 8 days ago - Pushed: 9 days ago
UMMS-Biocore/debrowser
Differential Count Data Analysis Toolbox- * DESCRIPTION
Size: 38.7 MB - Last synced: 17 days ago - Pushed: 4 months ago
rseng/rsepedia-analysis
Exploring clustering of research software encyclopedia entries- * _repos/github/JSB-UCLA/scPNMF/DESCRIPTION
Size: 435 MB - Last synced: 8 days ago - Pushed: 8 days ago
hbc/bcbioRNASeq
R package for bcbio RNA-seq analysis.- * DESCRIPTION
Size: 318 MB - Last synced: about 1 month ago - Pushed: about 2 months ago
TeamMacLean/mogo
R package for easy GO analysis of M.oryzae gene lists.- * DESCRIPTION
Size: 4.02 MB - Last synced: about 2 months ago - Pushed: about 1 year ago
BimberLab/geneSetVis
gene-set enrichment visualization.- * DESCRIPTION
Size: 84.7 MB - Last synced: about 1 month ago - Pushed: over 2 years ago
ok-gitr/geneSetVis
gene-set enrichment visualization.- * DESCRIPTION
Size: 84.8 MB - Last synced: about 1 year ago - Pushed: over 3 years ago
noriakis/CBNplot
Bayesian network plot for the enrichment analysis results- * DESCRIPTION
Size: 1.59 MB - Last synced: 16 days ago - Pushed: about 2 months ago
Huising-Lab/epiRomics
An R package designed to integrate and visualize various levels of epigenomic information, including but not limited to: ChIP, Histone, ATAC, and RNA sequencing. epiRomics is also designed to identify enhancer and enhanceosome regions from these data.- * DESCRIPTION
Size: 32.6 MB - Last synced: 6 months ago - Pushed: 6 months ago
gsx-ucas/QRAP
An R package for analysing RNA-seq Data based shiny- >= 1.10.0 DESCRIPTION
Size: 290 MB - Last synced: 3 months ago - Pushed: 11 months ago
cbg-ethz/pareg
Pathway enrichment computations using a regularized regression approach to incorporate inter-pathway relations in the statistical model.- * DESCRIPTION
Size: 19.5 MB - Last synced: 2 days ago - Pushed: 11 months ago
PNNL-Comp-Mass-Spec/MSnSet.utils Fork of vladpetyuk/vp.misc
custom wrappers of frequently used R code- * DESCRIPTION
Size: 65.9 MB - Last synced: 3 days ago - Pushed: 3 days ago
NurSyatila/DAGItoolsr
Implements methods to identify and analyse disease-associated genes. Several options are available: (1) gene search from databases, and (2) gene search from differential expression data. It also provides options to predict protein-protein interaction (via STRINGdb) and perform functional enrichment (via clusterProfiler).- >= 1.16.2 DESCRIPTION
Size: 185 KB - Last synced: 7 months ago - Pushed: over 1 year ago
huerqiang/clusterProfiler Fork of YuLab-SMU/clusterProfiler
:bar_chart: statistical analysis and visualization of functional profiles for genes and gene clusters- >= 1.9.3 DESCRIPTION
Size: 15 MB - Last synced: 8 months ago - Pushed: 8 months ago
mpierrejean/pintmf
- * DESCRIPTION
Size: 15.7 MB - Last synced: 2 months ago - Pushed: over 1 year ago
YuLab-SMU/meshes
:stethoscope: MeSH Enrichment and Semantic analyses- * DESCRIPTION
Size: 1.71 MB - Last synced: 8 days ago - Pushed: 9 days ago
ShellyCoder/cellcall
inferring cell-cell communication from scRNA-seq of ligand-receptor- >= 1.6.1 DESCRIPTION
Size: 16.4 MB - Last synced: 3 months ago - Pushed: 8 months ago
kharchenkolab/cacoa
Single-cell Case Control Analysis- * DESCRIPTION
Size: 5.59 MB - Last synced: 3 months ago - Pushed: 3 months ago
WubingZhang/MAGeCKFlute
Integrative analysis pipeline for pooled CRISPR functional genetic screens- * DESCRIPTION
Size: 228 MB - Last synced: 4 months ago - Pushed: 5 months ago
YuLab-SMU/ReactomePA
Reactome Pathway Analysis- * DESCRIPTION
Size: 5.47 MB - Last synced: 8 days ago - Pushed: 9 days ago
paulklemm/mygo
Create Report for mus musculus dataset of GO-term analysis using clusterProfiler- * DESCRIPTION
Size: 125 KB - Last synced: about 1 month ago - Pushed: 11 months ago
sk-sahu/sig-bio-shiny
A standalone interactive application for detecting biological significance on a set of genes- >= 1.7.1 DESCRIPTION
Size: 4.56 MB - Last synced: 3 months ago - Pushed: about 3 years ago
YuLab-SMU/MicrobiomeProfiler
:microbe: A shiny package for microbiome functional enrichment analysis- * DESCRIPTION
Size: 12.1 MB - Last synced: 8 days ago - Pushed: 9 days ago
swcyo/GSEAbar
Barplot for GSEA result- * DESCRIPTION
Size: 445 KB - Last synced: 5 months ago - Pushed: over 1 year ago
satishgaurav/discoverapp_rubiustx
- >= 0.99.7 packrat/lib/x86_64-pc-linux-gnu/3.6.3/clusterProfiler/DESCRIPTION
Size: 817 MB - Last synced: over 1 year ago
marseille-proteomique/mineCETSAapp Fork of mgerault/IMPRINTS.CETSA.app
Interactive shiny app for mineCETSA package, allowing you to analyze MS-CETSA data.- * DESCRIPTION
Size: 58.6 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
mjoppich/PLOSC
Plots and Scripts for scRNA-seq analysis- * DESCRIPTION
Size: 2.32 MB - Last synced: 2 months ago - Pushed: 2 months ago
ndreey/luandre
BI503G R-package- * DESCRIPTION
Size: 2.34 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
YuLab-SMU/ChIPseeker
:dart: ChIP peak Annotation, Comparison and Visualization- * DESCRIPTION
Size: 22.9 MB - Last synced: 8 days ago - Pushed: 9 days ago
jmw86069/multienrichjam
Analysis and Visualization of Multiple Gene Set Enrichments- * DESCRIPTION
Size: 99.8 MB - Last synced: 7 days ago - Pushed: 7 days ago
MingLi-929/ChIPseeker Fork of YuLab-SMU/ChIPseeker
:dart: ChIP peak Annotation, Comparison and Visualization- * DESCRIPTION
Size: 22.9 MB - Last synced: 5 months ago - Pushed: 5 months ago
huerqiang/GeoTcgaData Fork of YuLab-SMU/GeoTcgaData
Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA- * DESCRIPTION
Size: 17.2 MB - Last synced: 8 months ago - Pushed: 8 months ago
seoanezonjic/ExpHunterSuite Fork of Isabelggayte/DEgenesHunter
RNA-seq gene expression analysis suite- * DESCRIPTION
Size: 93.6 MB - Last synced: 7 days ago - Pushed: 7 days ago
abelew/hpgltools Fork of elsayed-lab/hpgltools
A collection of R functions to aid in host-pathogen genomic research- * DESCRIPTION
Size: 553 MB - Last synced: 3 days ago - Pushed: 4 days ago
AudreyBeaufils/DAFE
Cette application Rshiny est capale de réaliser l'analyse différentielle et enrichissement fonctionnelle- * DESCRIPTION
Size: 188 KB - Last synced: 8 months ago - Pushed: 8 months ago
belleau/enrichViewNet Fork of adeschen/enrichViewNet
From functional enrichment results to biological networks- * DESCRIPTION
Size: 5.28 MB - Last synced: 7 months ago - Pushed: 7 months ago
TeamMacLean/osgo
package for basic GO analysis of O.sativa- * DESCRIPTION
Size: 7.66 MB - Last synced: about 2 months ago - Pushed: over 1 year ago
reese3928/methylGSA
A Bioconductor package and shiny app for DNA methylation data length bias adjustment in gene set testing- * DESCRIPTION
Size: 7.06 MB - Last synced: 28 days ago - Pushed: about 3 years ago
cparsania/parcutils
An R package containing bioinformatics utility functions. Mostly related to RNAseq data analysis- * DESCRIPTION
Size: 101 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
cparsania/FungiExpresZ
An R-shiny package to analyse and visualise fungal gene expression data- >= 1.4.0 DESCRIPTION
Size: 335 MB - Last synced: 2 months ago - Pushed: 2 months ago
Yutong441/TBdev
Infer trophoblast trajectory using single cell RNA sequencing- * DESCRIPTION
Size: 1.11 MB - Last synced: 10 months ago - Pushed: over 2 years ago
SiYangming/tidyToy
- * DESCRIPTION
Size: 35.1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
Kan-E/rnaseqviewer
R package for automated, systematic, and integrated RNA-seq differential expression analysis- >= 0.10.2 DESCRIPTION
Size: 3.84 MB - Last synced: 7 months ago - Pushed: about 2 years ago
xiayh17/RNAseqStat2
- * DESCRIPTION
Size: 503 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
xiayh17/RNAseqStat
A Pipeline to Process RNAseq Data- * DESCRIPTION
Size: 158 MB - Last synced: 7 months ago - Pushed: almost 2 years ago
nephantes/debrowser_bioconductor_release
- * DESCRIPTION
Size: 7.58 MB - Last synced: about 1 year ago - Pushed: almost 6 years ago
hiddenntreasure/comorbidity
SSc and its cancer comorbidity- >= 1.9.3 clusterprofiler/DESCRIPTION
Size: 7.74 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
noriakis/CBNplotTest
- * DESCRIPTION
Size: 271 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
altairwei/brookite
Useful bioinformatics tools for R.- * DESCRIPTION
Size: 43 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
dming1024/TCGADependencies
Installation of R packages- * DESCRIPTION
Size: 2.93 KB - Last synced: about 1 year ago - Pushed: over 2 years ago
noriakis/cpbnplot
Bayesian network plot for the enrichment analysis results- * DESCRIPTION
Size: 1.33 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
Bishop-Laboratory/correlationAnalyzeR
Generate Novel Insights from Gene Correlation Data- * DESCRIPTION
Size: 86.1 MB - Last synced: 8 days ago - Pushed: almost 2 years ago
vari-bbc/bbcRNA
bbcRNA: An R package for facilitating RNA-Seq analysis- >= 1.4 DESCRIPTION
Size: 6.92 MB - Last synced: 11 months ago - Pushed: over 1 year ago
ComputationalProteomics/FusariumResponseInOatMethods
Interactive interface for study of Fusarium infection in oat- * DESCRIPTION
Size: 84 KB - Last synced: 5 days ago - Pushed: over 4 years ago
Christian-Heyer/cacoa Fork of kharchenkolab/cacoa
Single-cell Case Control Analysis- * DESCRIPTION
Size: 5.69 MB - Last synced: 11 months ago - Pushed: over 2 years ago
waldronlab/BugSigDBPaper
Figures and Tables for the BugSigDB paper- * DESCRIPTION
Size: 32.2 KB - Last synced: 7 months ago - Pushed: 7 months ago
GenomicsNX/debrowser Fork of UMMS-Biocore/debrowser
Differential Count Data Analysis Toolbox- * DESCRIPTION
Size: 23.3 MB - Last synced: about 2 months ago - Pushed: almost 2 years ago
bioc/clusterProfiler
This is a read-only mirror of the git repos at https://bioconductor.org- >= 1.9.3 DESCRIPTION
Size: 15.2 MB - Last synced: 22 days ago - Pushed: 22 days ago
bioc/multiSight
This is a read-only mirror of the git repos at https://bioconductor.org- * DESCRIPTION
Size: 3.23 MB - Last synced: about 2 months ago - Pushed: about 2 months ago
cran/TOmicsVis
:exclamation: This is a read-only mirror of the CRAN R package repository. TOmicsVis — Transcriptome Visualization Process Scheme. Homepage: https://benben-miao.github.io/TOmicsVis/ Report bugs for this package: https://github.com/benben-miao/TOmicsVis/issues/- * DESCRIPTION
Size: 7.67 MB - Last synced: 9 months ago - Pushed: 9 months ago
eleonore-schneeg/Omix
A Transcriptomics-Proteomics Integration Pipeline- * DESCRIPTION
Size: 73.4 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
HasiHays/cellcall Fork of ShellyCoder/cellcall
inferring cell-cell communication from scRNA-seq of ligand-receptor- >= 1.6.1 DESCRIPTION
Size: 16.4 MB - Last synced: 10 months ago - Pushed: over 1 year ago
bioc/debrowser
This is a read-only mirror of the git repos at https://bioconductor.org- * DESCRIPTION
Size: 23.7 MB - Last synced: 22 days ago - Pushed: 22 days ago
tzhu-bio/ChIPseeker Fork of YuLab-SMU/ChIPseeker
:dart: ChIP peak Annotation, Comparison and Visualization- * DESCRIPTION
Size: 22.9 MB - Last synced: 10 months ago - Pushed: about 1 year ago
vjcitn/pareg Fork of cbg-ethz/pareg
Pathway enrichment computations using a regularized regression approach to incorporate inter-pathway relations in the statistical model.- * DESCRIPTION
Size: 19.5 MB - Last synced: 12 days ago - Pushed: 11 months ago
UEFBiomedicalInformaticsLab/ThETA
ThETA: Transcriptome-driven Efficacy estimates for gene-based TArget discovery- * DESCRIPTION
Size: 43.1 MB - Last synced: 7 months ago - Pushed: about 3 years ago
MingLi-929/clusterProfiler Fork of YuLab-SMU/clusterProfiler
:bar_chart: A universal enrichment tool for interpreting omics data- >= 1.9.3 DESCRIPTION
Size: 14.4 MB - Last synced: 9 months ago - Pushed: over 2 years ago
Clearmind777/clusterProfiler Fork of YuLab-SMU/clusterProfiler
:bar_chart: A universal enrichment tool for interpreting omics data- >= 1.9.3 DESCRIPTION
Size: 15.1 MB - Last synced: 4 months ago - Pushed: 5 months ago
christensensm/COMPOSE
A set of R functions to augment analysis of CRISPR-related phenotypic screens- >= 1.2.0 DESCRIPTION
Size: 350 KB - Last synced: 9 months ago - Pushed: over 3 years ago
YinpuLi/multienrichjam Fork of jmw86069/multienrichjam
Analysis and Visualization of Multiple Gene Set Enrichments- * DESCRIPTION
Size: 43 MB - Last synced: 8 months ago - Pushed: about 2 years ago
TangLi025/ttFunctions
- * DESCRIPTION
Size: 9.77 KB - Last synced: 8 months ago - Pushed: about 1 year ago
amcassano/RNAseqAnalysisPackage
Package with functions to help with the DESeq2 based analysis of RNA seq data- * DESCRIPTION
Size: 44.7 MB - Last synced: about 16 hours ago - Pushed: about 17 hours ago
atuldeshpande/SpaceMarkers Fork of DeshpandeLab/SpaceMarkers
An R/Bioconductor software tool to identify genes associated with latent space interactions in spatial transcriptomics.- * DESCRIPTION
Size: 22.5 MB - Last synced: 3 days ago - Pushed: 4 days ago
cran/SCpubr
:exclamation: This is a read-only mirror of the CRAN R package repository. SCpubr — Generate Publication Ready Visualizations of Single Cell Transcriptomics Data. Homepage: https://github.com/enblacar/SCpubr/, https://enblacar.github.io/SCpubr-book/ Report bugs for this package: https://github.com/enblacar/SCpubr/iss ...- * DESCRIPTION
Size: 3.32 MB - Last synced: 7 months ago - Pushed: 8 months ago
AlexanderPico/clusterProfiler Fork of YuLab-SMU/clusterProfiler
:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters- >= 1.9.3 DESCRIPTION
Size: 15 MB - Last synced: 7 months ago - Pushed: 7 months ago
benben-miao/TOmicsVis
Transcriptomics Visualization R package.- * DESCRIPTION
Size: 198 MB - Last synced: 13 days ago - Pushed: 4 months ago
fallerlab/ARF
Differential Ribosomal heterogeneity Prediction through Ribosome Profiling generated rRNA fragments and their Proximity to Ribosomal Proteins- * DESCRIPTION
Size: 144 MB - Last synced: 6 months ago - Pushed: 6 months ago
hamamoto-lab/methPLIER
R package for DNA methylation data analysis using NMF with sparse regularization- >= 1.18.4 DESCRIPTION
Size: 158 MB - Last synced: about 1 month ago - Pushed: 6 months ago
wdb-web/pathwayss
- * DESCRIPTION
Size: 1.61 MB - Last synced: 6 months ago - Pushed: about 2 years ago
wdb-web/pathways_help
- * DESCRIPTION
Size: 3.73 MB - Last synced: 6 months ago - Pushed: over 1 year ago
showteeth/DEbPeak
DEbPeak - Analyze and integrate multi-omics to unravel the regulation of gene expression.- * DESCRIPTION
Size: 94.4 MB - Last synced: 3 months ago - Pushed: 5 months ago
cran/ReporterScore
:exclamation: This is a read-only mirror of the CRAN R package repository. ReporterScore — Generalized Reporter Score-Based Enrichment Analysis for Omics Data. Homepage: https://github.com/Asa12138/ReporterScore Report bugs for this package: https://github.com/Asa12138/ReporterScore/issues- * DESCRIPTION
Size: 3.02 MB - Last synced: about 2 months ago - Pushed: about 2 months ago
aicplane/Linkage
An R shiny web server for linking of ATAC-seq to gene expression data- * DESCRIPTION
Size: 385 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
NYUAD-Core-Bioinformatics/Nasqar2
- * debrowser-master/DESCRIPTION
Size: 21.6 MB - Last synced: about 1 month ago - Pushed: about 2 months ago
bioc/ExpHunterSuite
This is a read-only mirror of the git repos at https://bioconductor.org- * DESCRIPTION
Size: 93.3 MB - Last synced: 19 days ago - Pushed: 19 days ago
liubingdong/EasyMultiProfiler
The EasyMultiProfiler package aims to offer a user-friendly and efficient multi-omics data analysis tool on the R platform. It facilitates various essential tasks related to microbiome, genome, and metabolite downstream analysis, providing a seamless workflow from start to finish.- * DESCRIPTION
Size: 38.4 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
genejockey33000/typGumbo
A collection of internal scripts for RNAseq and Proteomic processing in the Young-Pearse lab.- * DESCRIPTION
Size: 2.96 MB - Last synced: 10 months ago - Pushed: 10 months ago
bioc/enrichViewNet
This is a read-only mirror of the git repos at https://bioconductor.org- * DESCRIPTION
Size: 6.61 MB - Last synced: 22 days ago - Pushed: 22 days ago
zisanurrahman/YuLab-SMU_MicrobiomeProfiler
- * DESCRIPTION
Size: 11.3 MB - Last synced: 26 days ago - Pushed: over 1 year ago
bioc/ChIPseeker
This is a read-only mirror of the git repos at https://bioconductor.org- * DESCRIPTION
Size: 22.9 MB - Last synced: 8 days ago - Pushed: 8 days ago
ijpb-bioinformatics/RFLOMICS
- * DESCRIPTION
Size: 57.9 MB - Last synced: 10 days ago - Pushed: 10 days ago
ISGLOBAL-Rakislova-Lab/HTGAnalizer
This repository contains a package for analyzing gene expression and GSEA in HTG transcriptomic panel samples. It offers intuitive QC, DGEA tools and GSE analysis.- * DESCRIPTION
Size: 82 KB - Last synced: 1 day ago - Pushed: 1 day ago