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GitHub / NYUAD-Core-Bioinformatics / Nasqar2
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/NYUAD-Core-Bioinformatics%2FNasqar2
Stars: 0
Forks: 0
Open Issues: 0
License: None
Language: R
Repo Size: 21.6 MB
Dependencies:
95
Created: 2 months ago
Updated: about 2 months ago
Last pushed: about 2 months ago
Last synced: 22 days ago
Files
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Readme
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Dependencies
Dockerfile
docker
- rocker/shiny 4.2.3 build
- continuumio/miniconda3 latest build
environment.yaml
conda
- bioconductor-biomformat
- bioconductor-clusterprofiler
- bioconductor-complexheatmap
- bioconductor-dada2
- bioconductor-debrowser
- bioconductor-deseq2
- bioconductor-enhancedvolcano
- bioconductor-interactivecomplexheatmap
- bioconductor-multiassayexperiment
- bioconductor-multtest
- bioconductor-pathview
- bioconductor-rsamtools
- bioconductor-sva
- libsodium
- r-base 4.2.2
- r-biocmanager
- r-clustree
- r-devtools
- r-dqshiny
- r-dt
- r-europepmc
- r-ggridges
- r-ggthemes
- r-ggupset
- r-ggvis
- r-gplots
- r-heatmaply
- r-igraph
- r-markdown
- r-mclust
- r-monocle3
- r-nmf
- r-pheatmap
- r-plotly
- r-rclipboard
- r-rcolorbrewer
- r-readr
- r-rhandsontable
- r-shiny
- r-shinybs
- r-shinycssloaders
- r-shinydashboard
- r-shinyjs
- r-sodium
- r-uuid
- r-vegan
- r-venndiagram
- ucsc-cell-browser
- umap-learn
- R >= 3.5.0 depends
- AnnotationDbi * imports
- DESeq2 * imports
- DOSE * imports
- DT * imports
- GenomicRanges * imports
- Harman * imports
- IRanges * imports
- RColorBrewer * imports
- RCurl * imports
- S4Vectors * imports
- SummarizedExperiment * imports
- annotate * imports
- apeglm * imports
- ashr * imports
- clusterProfiler * imports
- colourpicker * imports
- edgeR * imports
- enrichplot * imports
- ggplot2 * imports
- gplots * imports
- grDevices * imports
- graphics * imports
- heatmaply * imports
- igraph * imports
- jsonlite * imports
- limma * imports
- methods * imports
- org.Hs.eg.db * imports
- org.Mm.eg.db * imports
- pathview * imports
- plotly * imports
- reshape2 * imports
- shiny * imports
- shinyBS * imports
- shinydashboard * imports
- shinyjs * imports
- stats * imports
- stringi * imports
- sva * imports
- utils * imports
- knitr * suggests
- rmarkdown * suggests
- testthat * suggests