Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
Package Usage: cran: apeglm
View more package details: https://packages.ecosyste.ms/registries/cran.r-project.org/packages/apeglm
Dependent Repos 20
UMMS-Biocore/debrowser
Differential Count Data Analysis Toolbox- * DESCRIPTION
Size: 38.7 MB - Last synced: 20 days ago - Pushed: 4 months ago
thelovelab/DESeq2
Differential expression of RNA-seq data using the Negative Binomial- * DESCRIPTION
Size: 3.67 MB - Last synced: 8 days ago - Pushed: about 1 month ago
cancerbits/canceRbits
Wrapper and helper functions commonly used by the Developmental Cancer Genomics group at St. Anna Children's Cancer Research Institute- * DESCRIPTION
Size: 96.7 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
thelovelab/fishpond
Differential expression and allelic analysis, nonparametric statistics- * DESCRIPTION
Size: 7.01 MB - Last synced: 18 days ago - Pushed: 9 months ago
ferygood/TEKRABber
An R Bioinformatic package for DE and correlation analysis comparing between species.- * DESCRIPTION
Size: 10.3 MB - Last synced: 28 days ago - Pushed: about 2 months ago
acidgenomics/r-deseqanalysis
Toolkit for performing differential expression with DESeq2.- * DESCRIPTION
Size: 47.9 MB - Last synced: about 2 months ago - Pushed: about 2 months ago
r-pkg-team/r-bioc-fishpond
Fishpond: differential transcript and gene expression with- * DESCRIPTION
Last synced: about 1 year ago
guillaumecharbonnier/colab-r-libs
A test to see how I could save installation time for R libs each time I start a Colab notebook- * DESeq2/DESCRIPTION
Size: 156 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
oriolarques/GEGVIC
A workflow to analyse Gene Expression, Genetic Variations and Immune cell Composition of tumour samples using Next Generation Sequencing data- * DESCRIPTION
Size: 33.5 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
federicomarini/GeneTonicWorkshop
https://federicomarini.github.io/GeneTonicWorkshop- * DESCRIPTION
Size: 25.7 MB - Last synced: 17 days ago - Pushed: over 2 years ago
EricSDavis/hictoolsr
An R package with a collection of useful tools for Hi-C data analysis.- * DESCRIPTION
Size: 15.5 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
MicrobialGenomics-IrsicaixaOrg/dar
dar: runs multiple differential abundance analysis methods and through a consensus strategy returns a set of differentially abundant features.- * DESCRIPTION
Size: 38.5 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
amcassano/RNAseqPackage
Testing out making an R package for use in RNA seq- * DESCRIPTION
Size: 29.3 KB - Last synced: 9 months ago - Pushed: over 1 year ago
zentnerlab/TSRexploreR
- * DESCRIPTION
Size: 72.2 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
TobiTekath/DTUrtle
Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:- * DESCRIPTION
Size: 12.5 MB - Last synced: about 2 months ago - Pushed: about 2 months ago
UMMS-Biocore/dprofiler
- * DESCRIPTION
Size: 556 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
omsai/biocworkshops
Trimmed down BiocWorkshops 2018 repository for Data Carpentry R Bioconductor training- * DESCRIPTION
Last synced: over 1 year ago
jgilis/fishpond Fork of mikelove/fishpond
Differential transcript and gene expression, as well as helper functions for working with Salmon, alevin, and alevin-fry data.- * DESCRIPTION
Size: 2.91 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
GoekeLab/bambu
Reference-guided transcript discovery and quantification for long read RNA-Seq data- * DESCRIPTION
Size: 637 MB - Last synced: 11 months ago - Pushed: 11 months ago
NicWir/VisomX
An R package for User-Friendly and Comprehensive Analysis and Visualization of Omics Data- * DESCRIPTION
Size: 19.2 MB - Last synced: 3 months ago - Pushed: 3 months ago
mdeber/BRGenomics
Tools for efficient analysis of high resolution genomics data in R- * DESCRIPTION
Size: 10.8 MB - Last synced: 3 months ago - Pushed: 3 months ago
VincentAlcazer/hemRNA
hemRNA is a free open-source software developed to help clinicians and biologists in analyzing RNAseq data.- * DESCRIPTION
Size: 6.33 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
interactivereport/scRNAseq_DE
- >= 1.4.2 DESCRIPTION
Size: 939 KB - Last synced: 2 months ago - Pushed: over 1 year ago
mildpiggy/DEP2
An r package for proteomics data Analysis, developed from DEP.- * DESCRIPTION
Size: 118 MB - Last synced: 19 days ago - Pushed: 19 days ago
nab-iak/DESeq2 Fork of mikelove/DESeq2
Differential gene expression analysis based on the negative binomial distribution- * DESCRIPTION
Size: 3.43 MB - Last synced: 11 months ago - Pushed: over 1 year ago
ashley-brooke/rnaseqGene Fork of mikelove/rnaseqGene
RNA-seq workflow: gene-level exploratory analysis and differential expression- * DESCRIPTION
Size: 225 KB - Last synced: 11 months ago - Pushed: almost 2 years ago
ashley-brooke/BiocWorkshops Fork of Bioconductor/BiocWorkshops
:warning: 2018 :warning: Bioconductor Workshops- * DESCRIPTION
Size: 137 MB - Last synced: 11 months ago - Pushed: about 5 years ago
GenomicsNX/bambu Fork of GoekeLab/bambu
Reference-guided transcript discovery and quantification for long read RNA-Seq data- * DESCRIPTION
Size: 97.9 MB - Last synced: about 2 months ago - Pushed: about 3 years ago
GenomicsNX/debrowser Fork of UMMS-Biocore/debrowser
Differential Count Data Analysis Toolbox- * DESCRIPTION
Size: 23.3 MB - Last synced: about 2 months ago - Pushed: almost 2 years ago
Schaudge/bambu Fork of GoekeLab/bambu
Reference-guided transcript discovery and quantification for long read RNA-Seq data- * DESCRIPTION
Size: 548 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
felixshiyong/DESeq2 Fork of mikelove/DESeq2
Differential gene expression analysis based on the negative binomial distribution- * DESCRIPTION
Size: 3.02 MB - Last synced: 10 months ago - Pushed: over 5 years ago
zerack5/DESeq2 Fork of mikelove/DESeq2
Differential gene expression analysis based on the negative binomial distribution- * DESCRIPTION
Size: 3.4 MB - Last synced: 10 months ago - Pushed: almost 2 years ago
bioc/ERSSA
This is a read-only mirror of the git repos at https://bioconductor.org- >= 1.4.2 DESCRIPTION
Size: 4.91 MB - Last synced: 25 days ago - Pushed: 25 days ago
jleechung/bambu Fork of GoekeLab/bambu
Reference-guided transcript discovery and quantification for long read RNA-Seq data- * DESCRIPTION
Size: 97.9 MB - Last synced: 10 months ago - Pushed: about 3 years ago
bioc/DESeq2
This is a read-only mirror of the git repos at https://bioconductor.org- * DESCRIPTION
Size: 3.42 MB - Last synced: 25 days ago - Pushed: 25 days ago
bioc/debrowser
This is a read-only mirror of the git repos at https://bioconductor.org- * DESCRIPTION
Size: 23.7 MB - Last synced: 25 days ago - Pushed: 25 days ago
thelovelab/rnaseqGene
RNA-seq workflow: exploratory analysis and differential expression- * DESCRIPTION
Size: 229 KB - Last synced: 17 days ago - Pushed: 6 months ago
areyesq89/DESeq2 Fork of mikelove/DESeq2
Differential gene expression analysis based on the negative binomial distribution- * DESCRIPTION
Size: 3.5 MB - Last synced: 10 months ago - Pushed: over 1 year ago
bioc/fishpond
This is a read-only mirror of the git repos at https://bioconductor.org- * DESCRIPTION
Size: 1.51 MB - Last synced: 25 days ago - Pushed: 25 days ago
cran/RNAseqQC
:exclamation: This is a read-only mirror of the CRAN R package repository. RNAseqQC — Quality Control for RNA-Seq Data- * DESCRIPTION
Size: 9.07 MB - Last synced: 9 months ago - Pushed: almost 2 years ago
bioc/DiffBind
This is a read-only mirror of the git repos at https://bioconductor.org- * DESCRIPTION
Size: 77.5 MB - Last synced: 22 days ago - Pushed: 22 days ago
Mordziarz/bambu Fork of GoekeLab/bambu
Reference-guided transcript discovery and quantification for long read RNA-Seq data- * DESCRIPTION
Size: 637 MB - Last synced: 9 months ago - Pushed: 9 months ago
HaniceSun/DESeq2 Fork of thelovelab/DESeq2
Differential gene expression analysis based on the negative binomial distribution- * DESCRIPTION
Size: 3.2 MB - Last synced: 9 months ago - Pushed: over 4 years ago
lingminhao/bambu
bambu for singlecell- * DESCRIPTION
Size: 654 MB - Last synced: 6 months ago - Pushed: 8 months ago
mryals/scDEpipelineR6
- >= 1.4.2 DESCRIPTION
Size: 1.06 MB - Last synced: 2 months ago - Pushed: about 2 years ago
bioc/TEKRABber
This is a read-only mirror of the git repos at https://bioconductor.org- * DESCRIPTION
Size: 10.5 MB - Last synced: 25 days ago - Pushed: 25 days ago
bioc/dar
This is a read-only mirror of the git repos at https://bioconductor.org- * DESCRIPTION
Size: 1.73 MB - Last synced: 25 days ago - Pushed: 25 days ago
NYUAD-Core-Bioinformatics/Nasqar2
- * debrowser-master/DESCRIPTION
Size: 21.6 MB - Last synced: about 1 month ago - Pushed: 2 months ago
bioc/NanoporeRNASeq
This is a read-only mirror of the git repos at https://bioconductor.org- * DESCRIPTION
Size: 107 MB - Last synced: 22 days ago - Pushed: 22 days ago
bioc/rnaseqGene
This is a read-only mirror of the git repos at https://bioconductor.org- * DESCRIPTION
Size: 176 KB - Last synced: 22 days ago - Pushed: 22 days ago
kiddddd1218/DESeq2_py
- * The love/DESeq2-master/DESeq2-master/DESCRIPTION
Size: 2.94 MB - Last synced: about 2 months ago - Pushed: about 2 months ago
zisanurrahman/mikelove_DESeq2
- * DESCRIPTION
Size: 2.9 MB - Last synced: 29 days ago - Pushed: over 1 year ago
