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GitHub / TobiTekath / DTUrtle
Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TobiTekath%2FDTUrtle
Stars: 16
Forks: 3
Open Issues: 5
License: gpl-3.0
Language: R
Repo Size: 12.5 MB
Dependencies:
31
Created: almost 4 years ago
Updated: 7 months ago
Last pushed: 2 months ago
Last synced: 2 months ago
Topics: dtu, isoforms, rna-seq, rnaseq, single-cell, transcriptomics
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Dependencies
DESCRIPTION
cran
- R >= 3.6.0 depends
- sparseDRIMSeq * depends
- BiocParallel * imports
- DESeq2 * imports
- DT * imports
- GenomeInfoDb * imports
- GenomicFeatures * imports
- GenomicRanges * imports
- Gviz * imports
- Matrix * imports
- Matrix.utils * imports
- assertthat * imports
- formattable * imports
- ggplot2 * imports
- htmltools * imports
- htmlwidgets * imports
- knitr * imports
- lifecycle * imports
- methods * imports
- pheatmap * imports
- reshape2 * imports
- rtracklayer * imports
- scales * imports
- stageR * imports
- tximport * imports
- Seurat >= 3.0.0 suggests
- apeglm * suggests
- glmGamPoi * suggests
- magick * suggests
- webshot * suggests
- webshot2 * suggests