GitHub topics: isoforms
broadinstitute/g2papi
Python Client Library for the G2P Portal API
Language: Python - Size: 4.35 MB - Last synced at: 1 day ago - Pushed at: 23 days ago - Stars: 12 - Forks: 2
mskcc/vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
Language: Perl - Size: 15.9 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 392 - Forks: 222
ctglab/isoworm
A Snakemake pipeline developed to quantify isoforms expression levels in large RNA-seq datasets and find poly-A sites
Language: Python - Size: 51 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 4 - Forks: 0
mspodda/isoworm
A Snakemake pipeline developed to quantify isoforms expression levels in large RNA-seq datasets and find poly-A sites
Language: Python - Size: 50.8 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
g-insana/ortho2tree
Pipeline for the selection of canonical proteins for reference proteomes
Language: Python - Size: 18.1 MB - Last synced at: 2 days ago - Pushed at: 3 months ago - Stars: 2 - Forks: 0
gaolabtools/scNanoGPS
Single cell Nanopore sequencing data for Genotype and Phenotype
Language: Python - Size: 27 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 51 - Forks: 5
PacificBiosciences/IsoSeq
Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
Size: 13.4 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 210 - Forks: 63
VCCRI/Sierra
Discover differential transcript usage from polyA-captured single cell RNA-seq data
Language: R - Size: 19.9 MB - Last synced at: 5 months ago - Pushed at: about 2 years ago - Stars: 50 - Forks: 17
TheJacksonLaboratory/isopretGO
Isoform function prediction and interpretation
Language: Java - Size: 15.7 MB - Last synced at: 30 days ago - Pushed at: about 1 year ago - Stars: 9 - Forks: 2
mmkim1210/isoform-genetics
👨🏻👩🏻👧🏻👦🏻Heritability + genetic correlation analyses for 🧠human brain isoform expression
Language: Julia - Size: 94.5 MB - Last synced at: 7 days ago - Pushed at: 8 months ago - Stars: 3 - Forks: 0
bcgsc/RNA-Scoop
:shipit: interactive visualization of single-cell transcriptomes
Language: Java - Size: 298 MB - Last synced at: 4 months ago - Pushed at: over 1 year ago - Stars: 11 - Forks: 4
ashleymaeconard/time2splice
Method to identify temporal and sex-specific alternative splicing from multi-omic data, specifically RNA-seq + (CUT&RUN or ChIP-seq).
Language: Shell - Size: 15 MB - Last synced at: 7 months ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 1
TobiTekath/DTUrtle
Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:
Language: R - Size: 12.5 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 16 - Forks: 3
sheynkman-lab/Long-Read-Proteogenomics
A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
Language: Python - Size: 108 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 30 - Forks: 12
GENCARDIO/build_gene_transcript_db
Get the latest gene-transcript identifiers using Ensembl, RefSeq, MANE and LRGs models.
Language: Python - Size: 76.7 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
francescopatane96/Molecular-dynamics-with-NAMD
Perform molecular dynamics experiments (MD) with NAMD on colab
Language: Jupyter Notebook - Size: 115 KB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
jarnokoetsier/EXIS
EXIS is an interactive R shiny application for isoform-specific expression analysis.
Language: R - Size: 15 MB - Last synced at: over 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0
domenico-somma/Papillon
A python module to read and plot Galaxy RNA-seq data
Language: Python - Size: 271 KB - Last synced at: 19 days ago - Pushed at: almost 7 years ago - Stars: 1 - Forks: 1
nplonsk2/AIDD
Automated Isoform Discovery Detector (AIDD)
Language: R - Size: 61.7 MB - Last synced at: over 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0
tAndreani/SpliceQuant
Collection of Script to extract isoform estimation from MISO pipeline
Language: Shell - Size: 10.7 KB - Last synced at: over 2 years ago - Pushed at: about 9 years ago - Stars: 0 - Forks: 0
