mspodda/isoworm

A Snakemake pipeline developed to quantify isoforms expression levels in large RNA-seq datasets and find poly-A sites

Language: Python - Size: 50.8 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 0 - Forks: 0

hingelman/BifrostOmics

A bridge between omics datasets, bioinformatics & non-CS users

Language: Jupyter Notebook - Size: 51.1 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 0 - Forks: 0

Snakemake-Profiles/lsf

Snakemake profile for running jobs on an LSF cluster

Language: Python - Size: 166 KB - Last synced at: 7 days ago - Pushed at: 11 months ago - Stars: 37 - Forks: 22

hermidalc/rna-seq-star-gex

STAR + edgeR/DESeq2/limma-voom + GSEA RNA-seq gene expression analysis workflow

Language: Python - Size: 120 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

dohlee/snakemake-bismark-methyldackel

Bismark-MethylDackel DNA methylation quantification pipeline in snakemake.

Language: Python - Size: 24.4 KB - Last synced at: 11 days ago - Pushed at: over 3 years ago - Stars: 5 - Forks: 0

gavinf97/thesisreal

My final thesis project work from my Biomedical Genomics MSc undertaken at NUIG, 2021. Includes Nextflow, Snakemake, Bash, Python and R scripts.

Language: Jupyter Notebook - Size: 960 KB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

giesselmann/nanopype 📦

Snakemake pipelines for nanopore sequencing data archiving and processing

Language: Python - Size: 23.2 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 87 - Forks: 15

ChristopheVdE/Minion-Illumina-pipeline 📦

Language: Python - Size: 262 MB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

leylabmpi/alphafold_sm

Language: Python - Size: 1.91 MB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

deepalivasoya/Snakemake-food

Language: Python - Size: 16.6 MB - Last synced at: about 2 years ago - Pushed at: about 5 years ago - Stars: 4 - Forks: 1

cnuahs/snakemake-minimal

A minimal Snakemake pipeline.

Language: Python - Size: 1000 Bytes - Last synced at: 4 months ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0

datasnakes/orthoevol-snakemake

A snakemake workflow for the OrthoEvol python package.

Language: Python - Size: 11.7 KB - Last synced at: 3 months ago - Pushed at: almost 6 years ago - Stars: 1 - Forks: 0