Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: biotechnology

Repositories

bishaldev/Petition-collection

Size: 0 Bytes - Last synced: 1 day ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

dlopezyse/AI-for-Bio

A free and collaborative space for Machine Learning 🤖 applied to Biology 🧬

Language: Jupyter Notebook - Size: 396 KB - Last synced: 5 days ago - Pushed: 5 days ago - Stars: 22 - Forks: 3

In-Vivo-Group/theinvivogroup.github.io

theinvivogroup.com

Language: SCSS - Size: 105 MB - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 0 - Forks: 7

PeptoneLtd/dspp-keras

Protein order and disorder data for Keras, Tensor Flow and Edward frameworks with automated update cycle made for continuous learning applications.

Language: Python - Size: 74.2 KB - Last synced: 9 days ago - Pushed: almost 2 years ago - Stars: 166 - Forks: 21

auto-differentiation/xad

Comprehensive automatic differentiation in C++

Language: C++ - Size: 1.21 MB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 215 - Forks: 15

auto-differentiation/xad-py

High-Performance Automatic Differentiation for Python

Language: Python - Size: 144 KB - Last synced: 11 days ago - Pushed: 12 days ago - Stars: 6 - Forks: 0

cankocagil/BioStatistics

Differential Gene Expression, Phylogenetic tree, Sequence Alignments, Biostatistics, Bioinformatic

Language: R - Size: 3.97 MB - Last synced: 13 days ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 0

rohanrobinson/lgb

Your portal to the fast-paced biotech industry. Get smart by reading articles and papers curated by us.

Language: JavaScript - Size: 1.14 MB - Last synced: 17 days ago - Pushed: 17 days ago - Stars: 1 - Forks: 0

tklammsteiner/tklammsteiner.github.io

Personal website

Language: JavaScript - Size: 216 MB - Last synced: 18 days ago - Pushed: about 2 months ago - Stars: 1 - Forks: 0

yifan1207/Quantum-Based-Machine-Learning-Simulation

A Quantum Computing and Machine Learning Model that accelerates the Drug Research and Development process

Language: Python - Size: 5.38 MB - Last synced: 18 days ago - Pushed: 18 days ago - Stars: 46 - Forks: 9

SeroviICAI/Mamba-Biometric-EKG-Analysis-Technology-MambaBEAT

In the realm of EKG/ECG analysis, deep learning models have made significant strides. However, the pursuit of efficiency and accuracy persists. The proposed Mamba Biometric EKG Analysis Technology (MambaBEAT) project aims to utilize the Mamba model, a promising sequence modeling architecture, to further advance EKG analysis.

Language: Python - Size: 16.1 MB - Last synced: 19 days ago - Pushed: 19 days ago - Stars: 3 - Forks: 0

jp9573/BioTechHRM

Android application for Department Of Biotechnology and their 16 autonomous institutes.

Language: Java - Size: 472 KB - Last synced: 20 days ago - Pushed: almost 7 years ago - Stars: 2 - Forks: 0

jaimergp/phd-biotechnology-thesis

My PhD dissertation

Language: Python - Size: 58 MB - Last synced: 20 days ago - Pushed: over 5 years ago - Stars: 2 - Forks: 1

tusharpandey003/FASTA-Sequence-Analysis-Web-App

Analysis of FASTA ,Protein,DNA sequence.

Language: Python - Size: 28.3 KB - Last synced: 29 days ago - Pushed: 29 days ago - Stars: 0 - Forks: 0

study-groups/biotech-study-group

Biotech though the lens of machine learning.

Size: 13.4 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 1

AutoFlowResearch/SmartPeak

Fast and Accurate CE-, GC- and LC-MS(/MS) Data Processing

Language: C++ - Size: 203 MB - Last synced: 24 days ago - Pushed: about 1 year ago - Stars: 39 - Forks: 13

robertosolari/BioTech-Resources

Resources for learning Biotechnology, Biology, Synthetic Biology, Genomic and Bioinformatic

Size: 51.8 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 10 - Forks: 0

Gardner-BinfLab/TIsigner

Translation Initiation coding region designer

Language: CSS - Size: 3.86 MB - Last synced: about 2 months ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 2

chaibio/chaipcr

The software behind Chai's open-source Real-Time PCR instrument

Language: C++ - Size: 399 MB - Last synced: 30 days ago - Pushed: about 1 year ago - Stars: 85 - Forks: 32

bpucker/Boas_Pucker

Homepage of Boas Pucker listing publications and professional activities

Size: 101 KB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 3 - Forks: 0

vongomben/smart-foot-brace

notes over a smart foot brace based on ZNX-01 and IMU, communicating with a Node-RED UI (vers 0.1 and 0.2) and with p5js (in ver 0.3)

Language: C++ - Size: 27.3 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

pablocastilla/angiogenesis-analyzer

This project is done for the Biomedicine, Biotechnology and Public Healthcare department of the University of Cádiz. They idea is to automatize the processing of the microscopic images of their experiments related to angiogenesis.

Language: Python - Size: 61.6 MB - Last synced: 4 days ago - Pushed: 4 months ago - Stars: 14 - Forks: 6

Gardner-BinfLab/TISIGNER-ReactJS

TISIGNER: Unleash the power of synthetic biology

Language: JavaScript - Size: 160 MB - Last synced: about 2 months ago - Pushed: about 1 year ago - Stars: 18 - Forks: 7

jowillianto/ngl-viewer

A Repo dedicated to the development of an open source protein viewer easy to use and modify.

Size: 594 KB - Last synced: 27 days ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

AxelFougues/Lodestone-biomagnet-tools

Practical biomagnet stimulators for science, development and entertainment! Open source!

Size: 7 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 7 - Forks: 0

dvklopfenstein/ReactomePy

Explore biomolecular pathways in Reactome from the command-line or a Python script

Language: Python - Size: 17.3 MB - Last synced: 10 days ago - Pushed: 6 months ago - Stars: 21 - Forks: 4

Ahhmedsamehh/Bioinformatics_resources

This repo is dedicated to make bioinformatics resources available for anyone who wish to enter this field. (You may find it useful or not useful based on your level). I am still embarking my path in the field, just posting things based on my knowledge and the things which worked for me personally, they may/may not work with you, totally fine.

Size: 165 MB - Last synced: 3 months ago - Pushed: 4 months ago - Stars: 16 - Forks: 2

arunaang/arunaang.github.io

My personal website

Language: HTML - Size: 10.8 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 1 - Forks: 0

dfabianus/ElementalBalancing.jl

Implementation of elemental balancing of reaction rates

Language: Julia - Size: 4.07 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

CoolProgrammingUser/projectgrft Fork of SreeniEadara/projectgrft

A central, online location for public viewing of the goals and progress of the GRFT project

Language: CSS - Size: 3.52 MB - Last synced: 3 months ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

zenodeapp/genesis-parameters

GenesisL1 chain parameters. These include branding assets, state files, peers lists, seeds lists and rpc server lists for every known chain-id.

Size: 2.61 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 1

cybergeekgyan/Recommended-Books-and-Resources

Recommended Books for all Engineering Department Students at a single platform

Size: 41.8 MB - Last synced: 10 days ago - Pushed: almost 3 years ago - Stars: 4 - Forks: 2

dejangrba/rendering-life

This repo contains the Abstract and References sections of the forthcoming paper Rendering Life: Transgressive Affinities Between Bio Art and Generative Art.

Size: 2.72 MB - Last synced: 4 months ago - Pushed: about 2 years ago - Stars: 1 - Forks: 0

alexandredrefahl/pySisControl

Biotechnology laboratory control system migrated to Python-QT in Linux

Language: Python - Size: 16.3 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 1 - Forks: 0

M-ballabio1/app_dna_sequence_identification

Randomic Rybosome Web Application

Language: TypeScript - Size: 1.67 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

halftime/StonkModels

Hi wallstreet

Size: 53.7 KB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

igorandradeio/sequence-alignment

Implementation of Needleman-Wunsch's algorithm for sequences alignment using BLOSUM62 matrix

Language: Python - Size: 39.1 KB - Last synced: 5 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 1

satriobio/obi-one

Open Biotech Indonesia

Size: 2.93 KB - Last synced: 6 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

shyambhakta/wetlabcalc

Wetlab Calculator

Size: 1.52 MB - Last synced: 23 days ago - Pushed: 24 days ago - Stars: 12 - Forks: 0

dlopezyse/Drug-Repurposing-using-KGE

Drug repurposing using knowledge graph embeddings with a focus on vector-borne diseases

Language: HTML - Size: 405 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 3 - Forks: 0

tomek7667/biotech-js

Package developed at A&A Biotechnology for reading all kinds of biotechnology related files

Language: Gnuplot - Size: 46 MB - Last synced: 2 days ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

mejanros/m2pred

Language: Jupyter Notebook - Size: 17.4 MB - Last synced: 6 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

AxelFougues/ZINC-public-resources

ZINC is an indie project supported by the community. Thank you!

Size: 10.3 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 7 - Forks: 0

knirmani/github.io

Nirmani Resume

Language: HTML - Size: 1.91 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

HussainAther/biology

genomics, biochemistry, biotechnology, cell biology, biophysics, ecology

Language: Python - Size: 1.52 MB - Last synced: about 2 months ago - Pushed: 12 months ago - Stars: 13 - Forks: 0

beatrizgj/FLYCOP

FLYCOP (FLexible sYnthetic Consortium OPtimization)

Language: Python - Size: 5.51 MB - Last synced: 7 months ago - Pushed: over 5 years ago - Stars: 9 - Forks: 6

jvrana/DASi-DNA-Design

A Python molecular biology CAD tool with a dead-simple user interface

Language: Python - Size: 9.82 MB - Last synced: 2 days ago - Pushed: over 1 year ago - Stars: 10 - Forks: 1

multipitch/untilperfect

Solves the buffer preparation vessel sizing and assignment problem using mixed integer linear programming.

Language: Python - Size: 57.6 KB - Last synced: about 22 hours ago - Pushed: about 5 years ago - Stars: 1 - Forks: 0

ThecoderPinar/gen-expression

Gene expression analysis is a fundamental component of genomics research, providing valuable insights into how genes are regulated and their impact on various biological processes. This project delves into the realm of gene expression data, aiming to uncover hidden patterns and relationships within complex datasets. 🚀

Language: Jupyter Notebook - Size: 2.15 MB - Last synced: 3 months ago - Pushed: 8 months ago - Stars: 2 - Forks: 1

Ohara124c41/Systems-Biology-and-Biotechnology-Specialization

Icahn Graduate School of Medicine: Systems Biology & Biotechnology Specialization

Language: Matlab - Size: 32.5 MB - Last synced: 10 days ago - Pushed: almost 7 years ago - Stars: 10 - Forks: 0

Kuhjuice/sequence_alignment_by_cross_correlation

The project is based on the paper Sequence Alignment by Cross-Correlation and bridges the gap between the knowledge and an useful implementation.

Language: Python - Size: 3.02 MB - Last synced: about 1 hour ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

universvm/BacXeption

Deep Learning Template for bacterial image classification in Keras.

Language: Python - Size: 9.34 MB - Last synced: 10 days ago - Pushed: over 1 year ago - Stars: 8 - Forks: 2

emirhanai/AID362-Bioassay-Classification-and-Regression-Neuronal-Network-and-Extra-Tree-with-Machine-Learnin

I developed Machine Learning Software with multiple models that predict and classify AID362 biology lab data. Accuracy values are 99% and above, and F1, Recall and Precision scores are average (average of 3) 78.33%. The purpose of this study is to prove that we can establish an artificial intelligence (machine learning) system in health. With my regression model, you can predict whether it is Inactive or Inactive (Neural Network or Extra Trees). In classification (Neural Network or Extra Trees), you can easily classify the provided data whether it is Inactive or Active.

Language: Python - Size: 815 KB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 9 - Forks: 0

kirai/bio_hacking

Biotech with biopython

Language: Python - Size: 50.2 MB - Last synced: 11 days ago - Pushed: almost 7 years ago - Stars: 9 - Forks: 2

enginestein/Bionica

A 3D printable bionic arm created with Arduino

Language: C++ - Size: 6.01 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 1 - Forks: 0

MoleculAI/moleculai.github.io

MoleculAI Website

Language: HTML - Size: 20.5 KB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

MikolajMydel/msc-2022

App for analysing genetic code

Language: TypeScript - Size: 1.86 MB - Last synced: 7 months ago - Pushed: about 1 year ago - Stars: 4 - Forks: 0

Meristembio/Weaver

Open source web app for DNA design and management

Language: JavaScript - Size: 18.2 MB - Last synced: 8 months ago - Pushed: 9 months ago - Stars: 1 - Forks: 0

soniaionescu/rapidStacks

Image acquisition routine for the Scanning Lab at the Allen Institute for Brain Science

Language: Python - Size: 229 KB - Last synced: 9 months ago - Pushed: over 5 years ago - Stars: 3 - Forks: 0

matteoferla/DirEvo_tools

The new and improved server combining Pedel, Mutanalyst and much more

Language: Mako - Size: 30.5 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 3 - Forks: 1

PerisD/SynHybrids

Source data generated in Peris et al 2020 Nat Comm

Size: 63.5 MB - Last synced: 9 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 1

sarthak405/Tethered-cell-analysis Fork of kanishk-ux/Tethered-cell-analysis

Bacterial cells can be attached to the surface of a glass slide through their flagella which results in the cell body to rotate because of the presence of the bacterial flagellar motor, this program calculates angular velocity, number of frames rotated in clockwise direction and anti clockwise direction, frequency, length of cell, the center of rotation etc and gives outputs in the form of graphs and 2 .csv files

Language: Python - Size: 0 Bytes - Last synced: 9 months ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

francescopatane96/eNERVE

eNERVE is a dynamic, high-throughput and standalone in silico reverse vaccinology pipeline for eukaryotic protein candidate vaccines (PVCs) discovery from entire proteomes (FASTA file).

Language: Jupyter Notebook - Size: 128 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 2 - Forks: 1

nkran/guido

CRISPR sgRNA search and evaluation Python package.

Language: Jupyter Notebook - Size: 671 KB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 1 - Forks: 0

multipitch/dissertation 📦

Optimising the design of buffer preparation in bioprocessing facilities

Language: TeX - Size: 5.25 MB - Last synced: 10 months ago - Pushed: about 5 years ago - Stars: 1 - Forks: 0

deepflare/bioseqdb 📦

BioseqDB is a postgres-based extension to store and process genomical data

Language: C++ - Size: 29 MB - Last synced: 4 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 1

MetaSys-LISBP/glucose_acetate_interplay Fork of pierremillard/glucose_acetate_interplay

Supplementary information of Millard et al. 2023

Language: HTML - Size: 6.4 MB - Last synced: 24 days ago - Pushed: 11 months ago - Stars: 0 - Forks: 0

SysBioInra/rbatools

Programming interface to resource allocation modelling with the Resource Balance Analysis (RBA) method. This is version 1.0.3

Language: Python - Size: 5.03 MB - Last synced: 7 days ago - Pushed: 11 months ago - Stars: 2 - Forks: 2

francescopatane96/Computer_aided_drug_discovery_kit

This pipeline provides a way to perform pharmaceutical compounds virtual screening using similarity-based analysis, ligand-based and structure-based techniques. The pipeline contains a collections of modules to perform a variety of analysis.

Language: Jupyter Notebook - Size: 4.43 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 4 - Forks: 2

awakenedhaki/rosalind-bioinformatics-stronghold-cli

Rosalind Bioinformatics Stronghold Problem CLI

Language: Python - Size: 284 KB - Last synced: 12 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

apple-phi/thtools 📦

A library for the analysis of toehold switch riboregulators created by the iGEM team City of London UK 2021.

Language: Python - Size: 116 MB - Last synced: 10 months ago - Pushed: about 2 years ago - Stars: 4 - Forks: 3

LinyunLiu/Bioinformatics

Unraveling Evolutionary Relationship between Fungi Species

Language: Shell - Size: 187 MB - Last synced: 4 months ago - Pushed: about 1 year ago - Stars: 2 - Forks: 0

rosspeili/self-exec-last-will

A self executable last will in the format of a Solidity smart contract, compatible with the public Ethereum blockchain and relevant EVM-powered protocols and layers.

Language: Solidity - Size: 421 KB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 2 - Forks: 0

CompBtBs/FalseDiscoveriesAnalysis

Adjusting for false discoveries in constraint- and sampling-based differential metabolic flux analysis

Language: Jupyter Notebook - Size: 24.1 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 2 - Forks: 0

paucablop/dotnet.fermentation.simulator

Simulate industrial fermentation processes and generate large data sets resembling real systems 🚀

Language: C# - Size: 198 KB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 2 - Forks: 0

iAMB-RWTH-Aachen/Opol-GSMM

Genome scale metabolic model for Ogataea polymorpha NCYC495.

Language: HTML - Size: 18.5 MB - Last synced: about 2 months ago - Pushed: 5 months ago - Stars: 2 - Forks: 0

Mcdonoughd/BB1035 📦

This a repository for WPI BB1035 Intro to Biotechnology A Term 2016

Size: 212 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 1

paritoshk/paritoshk

I spend over ten years writing code and applying math and science. in each keystroke I found joy. I see life is a system that has variable entropy (E). Every process (p[i]) generates dE and my job is to understand what dE(p[i]) means.

Size: 52.7 KB - Last synced: 5 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

paucablop/dotnet.fermentation.kinetic.models

Library with kinetic models to simulate microbial growth

Language: F# - Size: 40 KB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

francescopatane96/Bioactivity-prediction-with-ML

Create a bioactivity prediction model using molecular descriptors (PADEL) and supervised machine learning (ML).

Language: Jupyter Notebook - Size: 2.05 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 1

zznidar/colony-counter

Automatically count colonies from a photo of your Petri dish

Language: JavaScript - Size: 977 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

IkramKhan-DevOps/exsapp-parkinsondetectionwithvoice

AI Powered application to detect parkinson (brain disease) with the help of Artificial Intelligence and Deep Learning.

Language: CSS - Size: 2.13 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 0

EthioAI/Malaria-Cell-Predictor

Malaria Cell Prediction

Language: Jupyter Notebook - Size: 222 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 4 - Forks: 0

francescopatane96/Molecular-dynamics-with-NAMD

Perform molecular dynamics experiments (MD) with NAMD on colab

Language: Jupyter Notebook - Size: 115 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

Binomica-Labs/Repo-Bio

Binomica Public Repository for Biological Parts

Size: 215 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 21 - Forks: 3

MoemenMamdouh99/DNA-toolkit-package

DNA toolkit package for easier analysis

Language: Python - Size: 2.93 KB - Last synced: 4 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

JGAguado/LabTronics

The Labtronics boards were designed as an educational set of boards for learning pure analogic circuits, digital systems, domotics, biotechnological applications and robotics

Size: 9.77 KB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

MetabolicEngineeringGroupCBMA/Pereira_et_al_2022

Pereira, Humberto, Flávio Azevedo, Lucília Domingues, and Björn Johansson. 2022. “Expression of Yarrowia Lipolytica Acetyl-CoA Carboxylase in Saccharomyces Cerevisiae and Its Effect on in-Vivo Accumulation of Malonyl-CoA.” *Computational and Structural Biotechnology Journal* 20 (January 1): 779–787.

Language: Jupyter Notebook - Size: 13.1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0