Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: molecular-biology

SPC-Facility-EMBL-Hamburg/eSPC_biophysics_platform

A collection of tools to analyse biophysical data. Written mostly in R and Python.

Language: R - Size: 39.2 MB - Last synced: about 11 hours ago - Pushed: 1 day ago - Stars: 2 - Forks: 0

Jared-Luxton/NASA-astronauts-telomeres-chromosomes

Impacts of Space Flight on Telomeres & DNA Rearrangements in Astronauts

Language: Jupyter Notebook - Size: 29.9 MB - Last synced: 2 days ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 2

gm1613/FLC_transcription_coupled_repression_model

Code for simulations and analysis used in Menon et al., 2024, "Proximal termination generates a transcriptional state that determines the rate of establishment of Polycomb silencing "

Language: C++ - Size: 52.7 KB - Last synced: 2 days ago - Pushed: 2 days ago - Stars: 0 - Forks: 0

Edinburgh-Genome-Foundry/DnaFeaturesViewer

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

Language: Python - Size: 15.5 MB - Last synced: 1 day ago - Pushed: 7 months ago - Stars: 562 - Forks: 88

bebop/poly

A Go package for engineering organisms.

Language: Go - Size: 12.9 MB - Last synced: about 23 hours ago - Pushed: 16 days ago - Stars: 652 - Forks: 68

BlueBrain/BioExplorer

The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration

Language: C++ - Size: 439 MB - Last synced: 5 days ago - Pushed: 5 days ago - Stars: 62 - Forks: 8

cryoem-uoft/cryosparc2_public

CryoSPARC is the state-of-the-art platform used globally for obtaining 3D structural information from single particle cryo-EM data. The cryoSPARC platform enables automated, high quality and high-throughput structure discovery of proteins, viruses and molecular complexes for research and drug discovery.

Language: Python - Size: 245 KB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 12 - Forks: 6

cryoem-uoft/cryosparc-tools

Python library that enables scripting access to CryoSPARC, a cryo-EM software package.

Language: Python - Size: 36.4 MB - Last synced: 6 days ago - Pushed: 6 days ago - Stars: 26 - Forks: 8

saezlab/pypath

Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.

Language: Python - Size: 141 MB - Last synced: 6 days ago - Pushed: 9 days ago - Stars: 128 - Forks: 42

johnnytam100/awesome-protein-design

A curated list of awesome protein design research, software and resources.

Size: 29.3 KB - Last synced: 5 days ago - Pushed: about 2 years ago - Stars: 11 - Forks: 1

lightdock/lightdock

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

Language: Python - Size: 93 MB - Last synced: 11 days ago - Pushed: 4 months ago - Stars: 276 - Forks: 35

3dem/relion

Image-processing software for cryo-electron microscopy

Language: C++ - Size: 58.1 MB - Last synced: 12 days ago - Pushed: 13 days ago - Stars: 426 - Forks: 194

LeandroD94/Papers

Papers in which I have been involved as data scientist. For the title, info and and/or the DOI of each one of them, check the corrispective "Paper_title_and_info" txt file

Language: R - Size: 15.9 MB - Last synced: 16 days ago - Pushed: 16 days ago - Stars: 2 - Forks: 0

bpucker/teaching

This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.

Size: 268 MB - Last synced: 20 days ago - Pushed: 21 days ago - Stars: 40 - Forks: 8

BojarLab/glycowork

Package for processing and analyzing glycans and their role in biology.

Language: Jupyter Notebook - Size: 675 MB - Last synced: 23 days ago - Pushed: 23 days ago - Stars: 51 - Forks: 11

saezlab/mistyR

Multiview Intercellular SpaTial modeling framework

Language: R - Size: 126 MB - Last synced: 11 days ago - Pushed: about 2 months ago - Stars: 39 - Forks: 9

Edinburgh-Genome-Foundry/Caravagene

🎨 Python library to plot multi-part genetic constructs

Language: Python - Size: 7.48 MB - Last synced: 1 day ago - Pushed: 10 months ago - Stars: 24 - Forks: 2

d8vela/ColabSeq

ColabSeq: The one-stop shop for all of your multiple sequence analysis needs.

Language: Jupyter Notebook - Size: 402 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

Edinburgh-Genome-Foundry/DnaCauldron

:alembic: Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies

Language: Python - Size: 3.41 MB - Last synced: 19 days ago - Pushed: 10 months ago - Stars: 49 - Forks: 11

Koeng101/dnadesign

A Go package for designing DNA.

Language: Go - Size: 10.5 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 17 - Forks: 0

SuLab/WikiGenomesBase

A configurable codebase for launching organism specific WikiGenomes spinoff applications (e.g. ChlamBase.org) This is a web application framework for creating a model organism database leveraging the taxonomic, genetic and functional data that has been loaded to Wikidata.org by the Gene Wiki Project.

Language: HTML - Size: 507 MB - Last synced: 30 days ago - Pushed: almost 4 years ago - Stars: 7 - Forks: 4

MahShaaban/pcr

Quality assessing, analyzing and testing the statistical significance of real-time quantitative PCR data

Language: R - Size: 275 KB - Last synced: 25 days ago - Pushed: over 1 year ago - Stars: 22 - Forks: 8

j-w-yun/Plasmid-Planner

Automatically plan the most optimal expression vector using restriction enzymes.

Language: Java - Size: 861 KB - Last synced: 3 months ago - Pushed: over 6 years ago - Stars: 4 - Forks: 1

NoahHenrikKleinschmidt/buildamol

A fragment-based molecular assembly toolkit

Language: Python - Size: 135 MB - Last synced: 7 days ago - Pushed: 8 days ago - Stars: 1 - Forks: 0

pallada-92/dna-3d-engine

3d engine implementation in DNA code!

Size: 116 KB - Last synced: 3 months ago - Pushed: over 3 years ago - Stars: 542 - Forks: 26

fsestini/zsyntax

Automated theorem prover for a linear logic-based calculus for molecular biology.

Language: Haskell - Size: 709 KB - Last synced: 3 days ago - Pushed: 11 months ago - Stars: 11 - Forks: 0

Edinburgh-Genome-Foundry/crazydoc

Read DNA sequences from colourful Microsoft Word documents

Language: Python - Size: 344 KB - Last synced: 13 days ago - Pushed: about 1 year ago - Stars: 31 - Forks: 3

Edinburgh-Genome-Foundry/BandWagon

🎺 Plot DNA digestion band patterns with Python

Language: Python - Size: 1.87 MB - Last synced: 4 days ago - Pushed: about 2 years ago - Stars: 19 - Forks: 3

oleksulkowski/Syn-CpG-Spacer

A Panel progressive web app for synonymous recoding of viral genomes with CpG dinucleotides

Language: Python - Size: 481 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 1 - Forks: 0

mattsolution/miniprep_vacuum_manifold

Vacuum manifold for miniprep plasmid DNA extraction application

Size: 4.4 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

V-Z/hybseq-scripts

Set of scripts to process HybSeq target enrichment HTS data (on computing grids).

Language: Shell - Size: 2.31 MB - Last synced: 26 days ago - Pushed: 27 days ago - Stars: 4 - Forks: 3

dvklopfenstein/ReactomePy

Explore biomolecular pathways in Reactome from the command-line or a Python script

Language: Python - Size: 17.3 MB - Last synced: 14 days ago - Pushed: 6 months ago - Stars: 21 - Forks: 4

sdhutchins/labrat

A basic science lab framework aimed at reproducibility and lab management.

Language: Python - Size: 223 KB - Last synced: 4 months ago - Pushed: 5 months ago - Stars: 10 - Forks: 6

scbirlab/streq

🧬 Python utilities for working with nucleotide sequence strings.

Language: Python - Size: 23.4 KB - Last synced: 17 days ago - Pushed: 12 months ago - Stars: 0 - Forks: 0

scbirlab/ogilo

⛓️ Automating construction of oligo library sequences for oligo array synthesis.

Language: Python - Size: 40 KB - Last synced: 17 days ago - Pushed: 11 months ago - Stars: 0 - Forks: 0

scbirlab/monte-barcode

🔴🟢🔵⚫️ Generating sets of random DNA sequences optimized for use in high-throughput sequencing.

Language: Python - Size: 50.8 KB - Last synced: 3 days ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

m-jahn/R-notebook-ralstonia-energy

Pipelines for data analysis and visualization of the Ralstonia energy metabolism

Size: 27.7 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

Gregorio-Lab/philament

Philament is a scientific application intended for the automated analysis of in-vitro motility (IVM) assays

Language: Python - Size: 195 KB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 1 - Forks: 0

m-jahn/ShinyMC

R Shiny based interface for monitoring bioreactors

Language: R - Size: 727 KB - Last synced: 3 months ago - Pushed: 4 months ago - Stars: 3 - Forks: 2

anocca-ab/sequence-viewer

A DNA and protein sequence viewer developed and maintained by Anocca

Language: TypeScript - Size: 2.64 MB - Last synced: 17 days ago - Pushed: 4 months ago - Stars: 6 - Forks: 2

pombo-lab/gamtools

Processing, quality control and analysis of GAM datsets

Language: Python - Size: 840 KB - Last synced: 11 days ago - Pushed: 11 months ago - Stars: 9 - Forks: 14

Jkgitau/Bioinformatics_resources

This is an archive of important resources and materials used in each project am working on

Size: 53.7 KB - Last synced: 6 months ago - Pushed: about 1 year ago - Stars: 2 - Forks: 0

timdecode/LifeBrush

A toolkit for painting agent-based mesoscale molecular simulations and illustrations.

Language: C++ - Size: 31.4 MB - Last synced: 2 months ago - Pushed: about 4 years ago - Stars: 49 - Forks: 8

mims-harvard/pathways

Disease pathways in the human interactome

Language: Python - Size: 1.46 MB - Last synced: about 2 months ago - Pushed: about 6 years ago - Stars: 21 - Forks: 6

V-Z/course-r-mol-data

R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.

Language: TeX - Size: 1.46 GB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 8 - Forks: 3

jlt3/ERCEs_2023

Scripts from Turner et al 2023 "Master transcription factor binding sites are necessary for early replication control element activity"

Language: Shell - Size: 5.86 KB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

naeemmrz/dResume

I am Naeem, a molecular biologist with comprehensive education and research experience in Molecular Biology and Genetics.

Language: Python - Size: 25.6 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

double-strand/double-strand.github.io

double-strand website

Size: 37.1 KB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

V-Z/sondovac

SondovaÄŤ is a script to create orthologous low-copy nuclear probes from transcriptome and genome skim data for target enrichment. For latest version check "releases".

Language: TeX - Size: 14.4 MB - Last synced: 7 months ago - Pushed: about 3 years ago - Stars: 5 - Forks: 2

ryantkoehler/rtPCR_viewer

Real-time PCR data viewer (Python 3 GUI with wxPython)

Language: Python - Size: 1.67 MB - Last synced: 7 months ago - Pushed: over 4 years ago - Stars: 4 - Forks: 1

IBT-FMI/ABI-expression-data_generator

Generate a package-manager-friendly archive of ABI gene expression maps registered in SAMRI standard space.

Language: Python - Size: 26.4 KB - Last synced: 7 months ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

nepiskopos/string-pattern-search

String k-mer pattern search in DNA strings in Molecular Biology problems.

Language: Jupyter Notebook - Size: 135 KB - Last synced: 7 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

mariasmfportela/candidate_primer_finder

Basic script to identify PCR primer candidates from the gene sequence

Language: Python - Size: 4.88 KB - Last synced: 7 months ago - Pushed: about 3 years ago - Stars: 1 - Forks: 0

mariasmfportela/primersUI-project

Simple web app to find candidate PCR primers from exon sequences

Language: Python - Size: 14.6 KB - Last synced: 7 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

jvrana/DASi-DNA-Design

A Python molecular biology CAD tool with a dead-simple user interface

Language: Python - Size: 9.82 MB - Last synced: 6 days ago - Pushed: over 1 year ago - Stars: 10 - Forks: 1

paulstothard/sequence_manipulation_suite

A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipulation Suite is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.

Size: 1.02 MB - Last synced: 7 months ago - Pushed: 8 months ago - Stars: 48 - Forks: 22

NicholasDominic/The-NucleoNets

A novel deep polygenic neural network for predicting and identifying yield-associated SNPs in Indonesian rice accessions.

Language: Python - Size: 192 KB - Last synced: 7 months ago - Pushed: about 2 years ago - Stars: 1 - Forks: 0

ccozens/astro-mol-bio-tools

Molecular biology tools in React x Typescript on Astro

Language: HTML - Size: 2.26 MB - Last synced: 29 days ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

hrshainik/biofidelicx-diary

biofidelicX diary is the ideal location to stay informed and up-to-date on the most recent research and discoveries in bio-science, whether you're a student, a scientist, or simply someone with a passion for learning about the natural world.

Language: JavaScript - Size: 2 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 3 - Forks: 0

MoTrPAC/MotrpacRatTraining6moData

Data for analysis of the MoTrPAC endurance exercise training study in 6-month-old rats

Language: R - Size: 420 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 10 - Forks: 0

Jon-Ting/molecular-modelling-of-reversible-covalent-inhibition-of-brutons-tyrosine-kinase-by-cyanoacrylamides

:zap: A repository containing research outputs from my computational chemistry Honours project.

Language: Python - Size: 107 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

ccozens/mol-bio-tools

Molecular biology x React = webpage for: transcribe DNA to RNA, reverse complement, protein translation, compute protein parameters

Language: JavaScript - Size: 630 KB - Last synced: 29 days ago - Pushed: about 1 year ago - Stars: 3 - Forks: 0

dacarlin/bagel-protocol

Laboratory protocol for the Bagel project

Size: 54.7 KB - Last synced: 8 months ago - Pushed: almost 7 years ago - Stars: 1 - Forks: 1

MoleculAI/moleculai.github.io

MoleculAI Website

Language: HTML - Size: 20.5 KB - Last synced: 8 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

jlikhuva/blog

A collection of detailed notes and random thoughts.

Size: 2.58 MB - Last synced: 9 months ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

LuHesketh/Python_Stuff

Python repository for anyone interested in Synthetic Biology, Laboratory Automation, robots and Genetic Engineering.

Language: Python - Size: 69.4 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 1 - Forks: 1

intbio-ncl/BiomationScripterLib

A Python library to assist with scripting bio-automation protocols

Language: Python - Size: 3.1 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 3 - Forks: 0

TheFraserLab/cisVar Fork of tehranchi/cisVar

cisVar scripts.

Language: Python - Size: 145 KB - Last synced: 16 days ago - Pushed: almost 6 years ago - Stars: 5 - Forks: 0

TheFraserLab/enrich_pvalues

Compare one dataset to another at a variety of p-value cutoffs to pick the best p-value

Language: Python - Size: 131 KB - Last synced: 4 months ago - Pushed: almost 6 years ago - Stars: 2 - Forks: 0

hyeshik/tailseeker

Software for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer

Language: C - Size: 1.36 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 18 - Forks: 7

sebastianalamina/GC_2023-2

Trabajos presentados como parte del curso de Genómica Computacional, impartido por el profesor Sergio Hernández López durante el semestre 2023-2 en la Facultad de Ciencias, UNAM.

Language: Jupyter Notebook - Size: 21.2 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

KarrLab/wc_kb

Tools for building databases of experimental data for constructing whole-cell models

Language: Python - Size: 95.2 MB - Last synced: 9 months ago - Pushed: almost 3 years ago - Stars: 3 - Forks: 5

KarrLab/datanator_frontend

Graphical web-based interface for the Datanator toolkit for discovering data for modeling cells

Language: JavaScript - Size: 13.2 MB - Last synced: 9 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 1

NikolasGialitsis/ProteinsDistanceGeometry

Exercises for MSc course "Algorithms in Structural Bioinformatics"

Language: Jupyter Notebook - Size: 958 KB - Last synced: 10 months ago - Pushed: about 4 years ago - Stars: 1 - Forks: 0

biodasturchi/docs

📡 Biodasturchi blog website

Language: TypeScript - Size: 23.9 MB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 4 - Forks: 1

LouisJustinTALLOT/Monoclonal_antibody_therapy

Report and oral presentation on the topic of Monoclonal Antibody Therapy

Language: TeX - Size: 15.1 MB - Last synced: 10 months ago - Pushed: about 2 years ago - Stars: 2 - Forks: 0

marcouderzo/StructuralBioinformatics-ContactNet Fork of TannerAGraves/StructBioInfo

Classification of Residue-Residue Interactions in Protein Structures using Deep Learning

Language: Python - Size: 36.7 MB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

ToshkaDev/Motif

V. M. Gumerov, E. P. Andrianova, M. A. Matilla, Karen M. Page, Elizabet Monteagudo-Cascales, A. C. Dolphin, T. Krell, I. B. Zhulin (2022). Amino acid sensor conserved from bacteria to humans.

Language: Python - Size: 25.7 MB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 1 - Forks: 2

fgajardoe/TE-workflows

Snakemake workflows for analyzing and visualizing transposable elements

Language: R - Size: 4.27 MB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

BenNicolet/CircRNA_in_MK_and_Erys

Repo for the script used in Nicolet et al. 2021 paper on the study of circRNA in megakaryoid and erythroid differentiation

Size: 85 KB - Last synced: 10 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

m-jahn/R-notebook-crispri-lib

R markdown notebooks for analysis of CRISPR inhibition library data

Language: Jupyter Notebook - Size: 456 MB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 3 - Forks: 1

DanielSchuette/cloningPrimer

Web App, CLI, and API for designing cloning primer pairs - written in Go👩🏼‍🔬👨🏼‍🔬

Language: Go - Size: 11.6 MB - Last synced: 10 months ago - Pushed: about 5 years ago - Stars: 3 - Forks: 2

Orpowell/CRISPR-Designer

A tool for designing sgRNAs and repair templates for CRISPR experiments

Language: Python - Size: 1.36 MB - Last synced: 10 months ago - Pushed: about 1 year ago - Stars: 2 - Forks: 0

pablocarderam/genetargeter

Creates a construct developed by the Niles Lab at MIT, designed to deliver a 3' UTR post-transcriptional regulatory element payload to a specific given gene in Plasmodium falciparum.

Language: Python - Size: 226 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

V-Z/structure-sum

Script to summarize the results from several structure runs

Language: R - Size: 27.3 KB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 0

V-Z/structure-multi-pbspro

Set of scripts to run STRUCTURE in parallel on computing grids like MetaCentrum. Scripts are designed for grids and clusters using PBS Pro, but can be easily adopted for another queue system.

Language: Shell - Size: 83 KB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 1 - Forks: 1

intelsp/VELA

Origin of LIFE Research Project.

Size: 16.6 KB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 1 - Forks: 0

pessoa-am/MBPT

A collection of simple python tools for molecular biology and bioinformatics

Language: Python - Size: 24.4 KB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

mnpw-leeds/PSIPREDauto

Easy and automated submission to the PSIPRED REST API via Python

Language: Python - Size: 320 KB - Last synced: 10 days ago - Pushed: about 2 years ago - Stars: 1 - Forks: 0

renan-almeidaa/Reconhecimento-de-padroes-frequentes-em-sequencias-de-DNA-com-k-mers-e-ECLAT

Machine Learning para reconhecimento de padrões em sequências de inserção da família IS4 com aplicação de k-mers e algoritmo de ECLAT.

Language: Jupyter Notebook - Size: 2.74 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

m-jahn/ShinyProt

R Shiny based browser for gene expression data

Language: R - Size: 85.1 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 3 - Forks: 0

qLSLab/ExTaxsI

Extaxsi is a bioinformatic library aimed to elaborate and visualize molecular and taxonomic informations.

Language: HTML - Size: 14.5 MB - Last synced: 15 days ago - Pushed: about 1 year ago - Stars: 4 - Forks: 2

Mcdonoughd/BB2950 📦

This a repository for WPI BB2950 Molecular Biology B Term 2017

Size: 291 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

ggirelli/GPSeq-source-data 📦

Source data for GPSeq manuscript.

Language: C - Size: 34.5 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 1

BleekerLab/protocols

Protocols for molecular biology, bioassays, metabolite analysis, etc.

Size: 13.3 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 1 - Forks: 2

Raschka-research-group/hotspotter

Hotspotter is software used to classify energetic hot spots of protein:protein interaction

Language: Jupyter Notebook - Size: 3.74 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 2 - Forks: 1

shiwentao00/Graphsite-classifier

Ligand-binding site classification with deep graph neural networks.

Language: Python - Size: 158 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 3 - Forks: 2

Vogel-lab/Integrative-multi-omics-analyses-of-FOXG1-functions

The documented analysis of the results reported in Akol et al., 2023 as R markdowns, Galaxy histories and jupyter logs..

Language: HTML - Size: 229 MB - Last synced: 11 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

jvrana/primer3-py-plus

A easy-to-use Python API for Primer3 primer design.

Language: Python - Size: 7.49 MB - Last synced: 11 days ago - Pushed: over 1 year ago - Stars: 11 - Forks: 7

mragsac/Ciona-Single-Cell-Gastrulation-Study

Analyses for "Chapter 3: Understanding Ciona intestinalis gastrulation at single-cell resolution" of Michelle Franc Ragsac's thesis dissertation

Size: 0 Bytes - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 1

Related Keywords
molecular-biology 122 bioinformatics 35 python 15 computational-biology 13 dna 12 r 11 data-science 11 biology 11 synthetic-biology 10 genomics 9 machine-learning 8 data-analysis 8 pipeline 7 protein 7 genetics 7 visualization 6 bioinformatics-analysis 6 structural-biology 6 ngs 6 science 5 bioinformatics-scripts 5 protein-structure 5 pcr 5 structural-bioinformatics 5 protein-sequences 4 population-genomics 4 statistics 4 laboratory-automation 4 protein-design 4 biochemistry 4 dna-assembly 4 artificial-intelligence 4 bioinformatics-pipeline 4 python3 4 molecular-modeling 3 dna-sequences 3 proteins 3 molecular-structures 3 protein-protein-interaction 3 cloning 3 phylogenetics 3 cryo-em 3 high-performance-computing 3 image-processing 3 database 3 bioinformatics-tool 3 sequencing 3 systems-biology 3 shiny-apps 3 data 3 biotechnology 3 fasta 3 genbank 3 population-genetics 3 genetic-engineering 3 drug-discovery 3 go 3 rna 3 rmarkdown-document 3 ngs-pipeline 3 metacentrum 3 python2 2 rna-seq 2 automation 2 r-programming 2 molecular-dynamics 2 bioconductor 2 react 2 data-visualization 2 deep-learning 2 optimization-algorithms 2 linux 2 ngs-analysis 2 gui 2 proteomics 2 transcriptome 2 hybseq-data 2 genome-browser 2 atac-seq 2 microbiology 2 qpcr 2 wikidata 2 research 2 crispr-cas9 2 sequence-analysis 2 sequence-alignment 2 phylogenomics 2 pathway-analysis 2 phylogenetic-trees 2 algorithms 2 notebook 2 evolution 2 reproducible-research 2 crispr 2 biological-data-analysis 2 crispr-design 2 dna-barcode 2 transcription 2 golden-gate 2 plasmids 2