TCossaLab/poriscope

An extensible plugin-based analysis framework for nanopore data

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ImagoXV/NanoASV

NanoASV official repo

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IdoBar/Oyster_hybrids_nanopore_seq

Nanopore DNA sequencing and analysis for identification of oyster hybrids

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biocorecrg/master_of_pores

Nextflow pipeline for analysis of direct RNA Nanopore reads

Language: Nextflow - Size: 448 MB - Last synced at: 2 months ago - Pushed at: 3 months ago - Stars: 106 - Forks: 17

Nirmal2310/NANOTAXI

An End-to-End GUI for real-time species identification via barcoded nanopore amplicon sequencing data. The pipeline is built using R Shiny library and majorly targets users with minimal coding background. Users can get from sequencing to results in a few clicks.

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renatosantos98/ont-benchmark

Supporting data for the publication "Investigating the performance of Oxford Nanopore long-read sequencing with respect to Illumina microarrays and short-read sequencing"

Language: Jupyter Notebook - Size: 199 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 5 - Forks: 1

gaolabtools/scNanoGPS

Single cell Nanopore sequencing data for Genotype and Phenotype

Language: Python - Size: 27 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 51 - Forks: 5

baynec2/nanopore_pipelines

Nanopore sequencing experimental protocols and computational pipelines

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STTLab/HIV-64148

HIV-64148, an integration of multiple long-read genome assemblers with a pipeline for analysis of HIV-1 genomic data from Oxford Nanopore Sequencing Technology or PacBio Real-Time (SMRT) Sequencing technology.

Language: Python - Size: 60.3 MB - Last synced at: 3 months ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0

CMU-SAFARI/RawHash

RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genomes) in real-time without basecalling. Described by Firtina et al. (published at https://academic.oup.com/bioinformatics/article/39/Supplement_1/i297/7210440).

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nunofonseca/msi

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Kathirvel-Kandasamy/Haplotype-aware-variant-calling-from-long-read-sequence

Haplotype aware variant calling from long read sequence

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asadprodhan/Dorado-basecalled-reads-improve-old-bacterial-genome-assembly

Dorado-basecalled reads improve old bacterial genome assembly

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leahkemp/ont_human_workflow

A generic best practice workflow for processing human Oxford Nanopore Technologies (ONT) sequencing data.

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areebapatel/Rapid-CNS2 📦

Rapid comprehensive adaptive nanopore-sequencing of CNS tumours set-up and analysis pipeline

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BeatsonLab-MicrobialGenomics/micropipe

A pipeline for high-quality bacterial genome construction using ONT sequencing

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tpatmd/STARS

Species-level Taxonomic Abundance from 16S rRNA Sequencing (STARS)

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tpatmd/amplimap-nf

A bioinformatic pipeline for aligning amplicon reads to a DNA database based on Nextflow

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cdelahaye/SeqFaiLR

Analysis of sequencing error profile for long read data.

Language: Python - Size: 302 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 10 - Forks: 2

marcDabad/snakemake_nanometh

snakemake pipeline based on nanopolish

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lsmo-epfl/zeopp-lsmo Fork of mharanczyk/zeoplusplus

zeo++ fork of the LSMO

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CarolinaPB/nanopore-assembly

Pipeline to assemble oxford nanopore long sequencing reads and perform variant calling with long and short reads

Language: Python - Size: 1.55 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 4 - Forks: 0

HKU-BAL/ONT-TB-NF

Comprehensive pipeline for detection of TB from ONT adaptive sequencing and amplicon data.

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shubhamchandak94/lossy_compression_evaluation

Impact of lossy compression of nanopore raw signal data on basecall and consensus accuracy

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AndreHolzer/PuntSeq Fork of d-j-k/puntseq

PuntSeq - Chasing the microbial diversity of Cambridge's freshwater

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