gaolabtools/scNanoGPS

Single cell Nanopore sequencing data for Genotype and Phenotype

Language: Python - Size: 27 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 51 - Forks: 5

biocorecrg/master_of_pores

Nextflow pipeline for analysis of direct RNA Nanopore reads

Language: Nextflow - Size: 448 MB - Last synced at: 8 days ago - Pushed at: 9 days ago - Stars: 101 - Forks: 17

renatosantos98/ont-benchmark

Supporting data for the publication "Investigating the performance of Oxford Nanopore long-read sequencing with respect to Illumina microarrays and short-read sequencing"

Language: Jupyter Notebook - Size: 156 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 3 - Forks: 0

ImagoXV/NanoASV

NanoASV official repo

Language: Shell - Size: 86.4 MB - Last synced at: 14 days ago - Pushed at: about 1 month ago - Stars: 9 - Forks: 3

CMU-SAFARI/RawHash

RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genomes) in real-time without basecalling. Described by Firtina et al. (published at https://academic.oup.com/bioinformatics/article/39/Supplement_1/i297/7210440).

Language: C - Size: 35.9 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 45 - Forks: 5

nunofonseca/msi

Language: Shell - Size: 5.82 MB - Last synced at: 5 months ago - Pushed at: about 2 years ago - Stars: 5 - Forks: 2

STTLab/HIV-64148

HIV-64148, an integration of multiple long-read genome assemblers with a pipeline for analysis of HIV-1 genomic data from Oxford Nanopore Sequencing Technology or PacBio Real-Time (SMRT) Sequencing technology.

Language: Python - Size: 60.3 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 1 - Forks: 0

Kathirvel-Kandasamy/Haplotype-aware-variant-calling-from-long-read-sequence

Haplotype aware variant calling from long read sequence

Language: Shell - Size: 12.7 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

leahkemp/ont_human_workflow

A generic best practice workflow for processing human Oxford Nanopore Technologies (ONT) sequencing data.

Language: Shell - Size: 125 KB - Last synced at: about 2 months ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 1

baynec2/nanopore_pipelines

Nanopore sequencing experimental protocols and computational pipelines

Language: Shell - Size: 333 KB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

areebapatel/Rapid-CNS2 📦

Rapid comprehensive adaptive nanopore-sequencing of CNS tumours set-up and analysis pipeline

Language: Shell - Size: 572 MB - Last synced at: about 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

BeatsonLab-MicrobialGenomics/micropipe

A pipeline for high-quality bacterial genome construction using ONT sequencing

Language: HTML - Size: 57.4 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 36 - Forks: 9

tpatmd/STARS

Species-level Taxonomic Abundance from 16S rRNA Sequencing (STARS)

Language: Nextflow - Size: 1.95 KB - Last synced at: 3 months ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

tpatmd/amplimap-nf

A bioinformatic pipeline for aligning amplicon reads to a DNA database based on Nextflow

Language: Nextflow - Size: 129 KB - Last synced at: 3 months ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

cdelahaye/SeqFaiLR

Analysis of sequencing error profile for long read data.

Language: Python - Size: 302 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 10 - Forks: 2

marcDabad/snakemake_nanometh

snakemake pipeline based on nanopolish

Language: Python - Size: 50.8 KB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0

lsmo-epfl/zeopp-lsmo Fork of mharanczyk/zeoplusplus

zeo++ fork of the LSMO

Language: C++ - Size: 5.55 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 1

CarolinaPB/nanopore-assembly

Pipeline to assemble oxford nanopore long sequencing reads and perform variant calling with long and short reads

Language: Python - Size: 1.55 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 4 - Forks: 0

HKU-BAL/ONT-TB-NF

Comprehensive pipeline for detection of TB from ONT adaptive sequencing and amplicon data.

Language: Nextflow - Size: 1.89 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0

shubhamchandak94/lossy_compression_evaluation

Impact of lossy compression of nanopore raw signal data on basecall and consensus accuracy

Language: Jupyter Notebook - Size: 254 MB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 3 - Forks: 0

AndreHolzer/PuntSeq Fork of d-j-k/puntseq

PuntSeq - Chasing the microbial diversity of Cambridge's freshwater

Language: HTML - Size: 482 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0