Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: fast5
rnajena/read5
Wrapper to read fast5, slow5, blow5 and pod5 files.
Language: Python - Size: 1.64 MB - Last synced: 27 days ago - Pushed: 2 months ago - Stars: 8 - Forks: 1
novoalab/modPhred
modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
Language: Python - Size: 47.9 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 13 - Forks: 1
bsaintjo/slow5-rs
Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
Language: Rust - Size: 986 KB - Last synced: 21 days ago - Pushed: 3 months ago - Stars: 9 - Forks: 0
bsaintjo/pod5-rs
Rust library to support interacting with Oxford Nanopore POD5 files
Language: Rust - Size: 4.01 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 1 - Forks: 0
igordot/genomics
A collection of scripts and notes related to genomics and bioinformatics
Language: R - Size: 241 KB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 182 - Forks: 51
rnajena/read5_ont
Wrapper to read fast5 and pod5 files.
Language: Python - Size: 796 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0
CMU-SAFARI/Molecules2Variations
The first work to provide a comprehensive survey of a prominent set of algorithmic improvement and hardware acceleration efforts for the entire genome analysis pipeline used for the three most prominent sequencing data, short reads (Illumina), ultra-long reads (ONT), and accurate long reads (HiFi). Described in arXiv (2022) by Alser et al. https://arxiv.org/abs/2205.07957
Size: 4.31 MB - Last synced: about 1 month ago - Pushed: almost 2 years ago - Stars: 8 - Forks: 0
Shians/PorexploreR
Bob Loblaw's Law Blog Applauds Porexplorer
Language: R - Size: 4.68 MB - Last synced: 10 months ago - Pushed: almost 5 years ago - Stars: 1 - Forks: 0
JannesSP/read5.github.io
Documentation for the https://github.com/JannesSP/read5 repository
Language: HTML - Size: 118 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0
mbhall88/fast5seek 📦
Subset of fast5 files contained in a fastq, BAM, or SAM file.
Language: Python - Size: 4.05 MB - Last synced: 30 days ago - Pushed: about 1 year ago - Stars: 11 - Forks: 2
Psy-Fer/fast5_fetcher
A tool for fetching nanopore fast5 files after filtering via demultiplexing, alignment, or other, to improve downstream processing efficiency
Language: Python - Size: 1.03 MB - Last synced: over 1 year ago - Pushed: over 5 years ago - Stars: 14 - Forks: 4
mbhall88/tinysink
Synchronise Nanopore reads with a server.
Language: Shell - Size: 8.79 KB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 1 - Forks: 1