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GitHub topics: nanopore-minion

ImagoXV/NanoASV

NanoASV official repo

Language: Shell - Size: 86.4 MB - Last synced at: about 2 months ago - Pushed at: 3 months ago - Stars: 9 - Forks: 3

CMU-SAFARI/RawHash

RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genomes) in real-time without basecalling. Described by Firtina et al. (published at https://academic.oup.com/bioinformatics/article/39/Supplement_1/i297/7210440).

Language: C - Size: 35.9 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 45 - Forks: 5

rln0005/minION_align

A script designed to generate multiple different alignments and consensus sequences from Oxford Nanopore minION sequence data from a 36kb circular haploid plasmid.

Language: Shell - Size: 120 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 0

Related Keywords
nanopore-minion 3 bioinformatics 2 nanopore-sequencing 2 nanopore-reads 2 nanopore-analysis-pipeline 2 nanopore 2 workflow 1 contamination 1 event-detection 1 genome-analysis 1 hash-tables 1 nanopore-data 1 raw-nanopore-signal-analysis 1 raw-signal 1 rawhash 1 read-mapping 1 relative-abundances 1 seeding 1 segmentation 1 snakemake-workflow 1 snakemake 1 singularity 1 open-source 1 metabarcoding-pipeline 1 metabarcoding 1 end-to-end 1 docker 1 conda-environment 1 conda 1 bioinformatics-pipeline 1 asv 1 amplicon-sequencing 1