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GitHub / CarolinaPB / nanopore-assembly
Pipeline to assemble oxford nanopore long sequencing reads and perform variant calling with long and short reads
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CarolinaPB%2Fnanopore-assembly
Stars: 4
Forks: 0
Open Issues: 0
License: None
Language: Python
Repo Size: 1.55 MB
Dependencies:
431
Created: over 2 years ago
Updated: about 1 year ago
Last pushed: 4 months ago
Last synced: 4 months ago
Topics: bioinformatics, genomics, nanopore, nanopore-analysis-pipeline, nanopore-assembly, snakemake, variant-calling
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Dependencies
requirements.txt
pypi
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- texttable =1.6.4=pyhd8ed1ab_0
- tigmint =1.2.4=py39h39abbe0_1
- tk =8.6.11=h27826a3_1
- tktable =2.10=hb7b940f_3
- toml =0.10.2=pyhd8ed1ab_0
- toposort =1.7=pyhd8ed1ab_0
- traitlets =5.1.0=pyhd8ed1ab_0
- typing-extensions =3.10.0.2=hd8ed1ab_0
- typing_extensions =3.10.0.2=pyha770c72_0
- tzdata =2021c=he74cb21_0
- ubiquerg =0.6.1=pyh9f0ad1d_0
- ucsc-fatotwobit =377=h0b8a92a_4
- ucsc-twobitinfo =377=h0b8a92a_2
- uritemplate =3.0.1=py_0
- urllib3 =1.26.7=pyhd8ed1ab_0
- util-linux =2.36=py39h28948ff_1
- veracitools =0.1.3=py_0
- wcwidth =0.2.5=pyh9f0ad1d_2
- wget =1.20.3=ha56f1ee_1
- wheel =0.37.0=pyhd8ed1ab_1
- wrapt =1.13.1=py39h3811e60_0
- xmlrunner =1.7.7=py_0
- xorg-fixesproto =5.0=h7f98852_1002
- xorg-inputproto =2.3.2=h7f98852_1002
- xorg-kbproto =1.0.7=h7f98852_1002
- xorg-libice =1.0.10=h7f98852_0
- xorg-libsm =1.2.3=hd9c2040_1000
- xorg-libx11 =1.7.2=h7f98852_0
- xorg-libxau =1.0.9=h7f98852_0
- xorg-libxdmcp =1.1.3=h7f98852_0
- xorg-libxext =1.3.4=h7f98852_1
- xorg-libxfixes =5.0.3=h7f98852_1004
- xorg-libxi =1.7.10=h7f98852_0
- xorg-libxpm =3.5.13=h7f98852_0
- xorg-libxrender =0.9.10=h7f98852_1003
- xorg-libxt =1.2.1=h7f98852_2
- xorg-libxtst =1.2.3=h7f98852_1002
- xorg-recordproto =1.14.2=h7f98852_1002
- xorg-renderproto =0.11.1=h7f98852_1002
- xorg-xextproto =7.3.0=h7f98852_1002
- xorg-xproto =7.0.31=h7f98852_1007
- xz =5.2.5=h516909a_1
- yaml =0.2.5=h516909a_0
- yarl =1.5.1=py39h07f9747_0
- zipp =3.6.0=pyhd8ed1ab_0
- zlib =1.2.11=h36c2ea0_1013
- zsh =5.6.2=h8f967e6_1001
- zstd =1.4.9=ha95c52a_0