peppy | pypi | Package Usage | Ecosyste.ms: Repos

pepkit/peppy

Project metadata manager for PEPs in Python

* requirements/requirements-doc.txt

Size: 2.92 MB - Last synced: 17 days ago - Pushed: 2 months ago

pepkit/eido

Validator for PEP objects

>=0.32.0 requirements/requirements-all.txt
* webeido/requirements/requirements-all.txt

Size: 371 KB - Last synced: 11 days ago - Pushed: 2 months ago

pepkit/looper

A job submitter for Portable Encapsulated Projects

>=0.31.0 requirements/requirements-all.txt

Size: 3.86 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

databio/mkdocs-databio

Lab theme for mkdocs

* requirements/requirements-all.txt

Size: 1.32 MB - Last synced: 20 days ago - Pushed: 6 months ago

databio/bedbuncher 📦

A pipeline for bedsets

==0.22.3 requirements/requirements.txt

Size: 117 KB - Last synced: 20 days ago - Pushed: 5 months ago

afrendeiro/toolkit

A toolkit for NGS analysis with Python

>=0.30.1 requirements/requirements.txt

Size: 1.56 MB - Last synced: 19 days ago - Pushed: over 1 year ago

naturalis/mtdna-reference-database

Reference database of panels of genomes for population-level aDNA identification

=0.32.0=pyhd8ed1ab_1 doc/environment_requirements.txt

Size: 61.2 MB - Last synced: 2 months ago - Pushed: 9 months ago

wzuhou/Genome_assembly_annotation

Scripts and pipeine for Genome_assembly_annotation

=0.31.2=pyhd8ed1ab_2 Anno_pipeline/requirements.txt

Size: 108 KB - Last synced: 7 days ago - Pushed: 7 days ago

thomasbtf/snakesite

Interactive execution of Snakemake workflows via a web interface.

=0.31.1=pyhd8ed1ab_0 requirements.txt

Size: 224 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago

pepkit/pephub.databio.org 📦

Data stores for pephub PEPs

==0.31.2 scripts/requirements.txt

Size: 7.47 MB - Last synced: about 2 months ago - Pushed: 11 months ago

databio/pepatac

A modular, containerized pipeline for ATAC-seq data processing

>=0.31.1 requirements.txt

Size: 21.8 MB - Last synced: 20 days ago - Pushed: 4 months ago

CarolinaPB/nanopore-assembly

Pipeline to assemble oxford nanopore long sequencing reads and perform variant calling with long and short reads

=0.31.1=pyhd8ed1ab_0 requirements.txt

Size: 1.55 MB - Last synced: 3 months ago - Pushed: 3 months ago

desouzalab/scRNAClust

=0.31.1=pyhd8ed1ab_0 requirements.txt

Size: 170 MB - Last synced: about 1 year ago - Pushed: about 2 years ago

J-81/Analysis_Staging

* setup.py

Size: 202 KB - Last synced: about 1 year ago - Pushed: over 2 years ago

pepkit/pepserver

==0.31.1 requirements/requirements-all.txt
==0.31.1 requirements.txt

Size: 10.7 KB - Last synced: about 2 months ago - Pushed: over 2 years ago

CarolinaPB/whole-genome-alignment

=0.31.2=pyhd8ed1ab_2 requirements.txt

Size: 790 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

gonzalosm98/scRNA-SeqAnalysis

=0.31.2=pyhd8ed1ab_2 requirements.txt

Size: 62.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

nxwi/illacceptanything Fork of illacceptanything/illacceptanything

The project where literally anything* goes.

* data/requirements.txt

Size: 1.33 GB - Last synced: 7 months ago - Pushed: over 1 year ago

okimototakuya/master-research-tut

=0.31.1=pyhd8ed1ab_0 venv/requirement.txt

Size: 557 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

NBChub/bgcflow_wrapper

A snakemake wrapper and utility tools command line interface for BGCFlow.

0.35.2 poetry.lock
^0.35.4 pyproject.toml

Size: 1.77 MB - Last synced: about 13 hours ago - Pushed: about 14 hours ago

pepkit/geofetch

Builds a PEP from SRA or GEO accessions

>=0.35.3 requirements/requirements-all.txt

Size: 913 KB - Last synced: 17 days ago - Pushed: 3 months ago

illacceptanything/illacceptanything

The project where literally anything* goes.

* data/requirements.txt

Size: 1.47 GB - Last synced: 10 days ago - Pushed: 10 days ago

pepkit/pephub

A web API and database for biological sample metadata

* requirements/requirements-all.txt
<=0.35.5 requirements/requirements-all-macos.txt
<=0.40.0a4 requirements/requirements-all-docker.txt

Size: 17.2 MB - Last synced: about 2 months ago - Pushed: 3 months ago

matinnuhamunada/bgcflow_wrapper

A snakemake wrapper and utility tools for BGCFlow.

0.35.2 poetry.lock

Size: 604 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

databio/peppro

A modular, containerized pipeline for PRO-seq data processing

>=0.31.1 requirements.txt

Size: 33.9 MB - Last synced: 20 days ago - Pushed: 6 months ago

pnm27/snRNA_scRNA_Pipeline

Snakemake Pipeline with "selectable" modules

=0.31.1=pyhd8ed1ab_0 requirements/requirements_conda.txt

Size: 9.99 MB - Last synced: 13 days ago - Pushed: 13 days ago

pepkit/caravel

A web GUI for pipeline job submission and management

>=0.22.3 caravel/requirements/requirements-all.txt

Size: 1.2 MB - Last synced: about 2 months ago - Pushed: over 3 years ago

pepkit/pepstat

>=0.32.0 requirements/requirements-all.txt

Size: 142 KB - Last synced: about 2 months ago - Pushed: almost 2 years ago

pepkit/pepconvert 📦

Convert PEP metadata into other formats

>=0.31.0 requirements/requirements-all.txt

Size: 14.6 KB - Last synced: about 2 months ago - Pushed: about 3 years ago

pepkit/pepkit

Meta-package for all pepkit tools

>=0.20 requirements/requirements-all.txt

Size: 7.81 KB - Last synced: about 2 months ago - Pushed: about 5 years ago

ntchambers/illacceptanything

The project where literally anything* goes

* requirements.txt

Last synced: over 1 year ago

NMRL/Ardetype

Pipeline allows to perform reference-guided de-novo assembly of bacterial genomes, starting from Illumina PE150 fastq files.

==0.31.2 unittests/requirements.txt

Size: 100 MB - Last synced: 10 days ago - Pushed: 11 days ago

007gzs/test

* requirements.txt

Size: 1.6 MB - Last synced: 4 months ago - Pushed: 4 months ago

PMBio/scdali_analyses

=0.31.1=pyhd8ed1ab_0 requirements.txt

Size: 34.3 MB - Last synced: 23 days ago - Pushed: over 2 years ago

lobrylab/PitViper

Snakemake pipeline for meta-analysis of functional screening data

=0.40.1=pyhd8ed1ab_0 PitViper/requirements.txt

Size: 30.2 MB - Last synced: 5 days ago - Pushed: 6 days ago

dnalinkbi/SARS-CoV-Dashboard

PacBio SARS-CoV Analysis Dashboard

==0.35.2 requirements.txt

Size: 4.62 MB - Last synced: 12 months ago - Pushed: 12 months ago

vidhyaboghara/Semantic-and-Sentiment-Analysis

Sentiment Analysis performed on twitter data and Semantic Analysis performed on News articles extracted from news API

* required_files/positive-words.txt

Size: 757 KB - Last synced: about 1 year ago - Pushed: about 4 years ago

TheBearodactyl/illacceptanything Fork of illacceptanything/illacceptanything

The project where literally anything* goes.

* data/requirements.txt

Size: 1.33 GB - Last synced: 10 months ago - Pushed: 10 months ago

braillescreen/illacceptanything Fork of illacceptanything/illacceptanything

The project where literally anything* goes.

* data/requirements.txt

Size: 1.47 GB - Last synced: 9 months ago - Pushed: about 1 year ago

boginw/illacceptanything Fork of illacceptanything/illacceptanything

The project where literally anything* goes.

* data/requirements.txt

Size: 1.33 GB - Last synced: about 1 month ago - Pushed: 9 months ago

epigen/mthfd1 📦

==v0.9.2 requirements.txt

Size: 49.8 KB - Last synced: about 1 year ago - Pushed: about 5 years ago

epigen/baf_complex 📦

Schick et al 2018 - Systematic functional characterization of BAF mutations yields novel intra-complex synthetic lethalities

==v0.9.2 requirements.txt

Size: 1 MB - Last synced: 9 months ago - Pushed: about 5 years ago

scilus/nf-scil

SCIL Nextflow Toolbox

0.35.7 poetry.lock

Size: 116 MB - Last synced: about 9 hours ago - Pushed: about 9 hours ago

Tuks-ICMM/Pharmacogenetic-Analysis-Pipeline

A Snakemake powered pipeline developed to perform variant-effect-prediction and frequency analysis given multiple Variant Call Format datasets. This has been developed in partial fulfilment of a MSc in Bioinformatics at the University of Pretoria by Graeme Ford.