Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub / afrendeiro / toolkit

A toolkit for NGS analysis with Python

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/afrendeiro%2Ftoolkit

Stars: 13
Forks: 4
Open Issues: 13

License: gpl-3.0
Language: Python
Repo Size: 1.56 MB
Dependencies: 45

Created: almost 7 years ago
Updated: 9 months ago
Last pushed: over 1 year ago
Last synced: about 1 month ago

Topics: atac-seq, bioinformatics, chip-seq, looper, ngs, ngs-analysis, project-management, pypiper, rna-seq

Files

Loading...

Readme

Loading...

Dependencies

requirements/requirements.docs.txt pypi

requirements/requirements.single_cell.txt pypi

requirements/requirements.test.txt pypi

codacy-coverage * test
codecov * test
coverage >=4.5.2 test
pytest >=4.4.0 test
pytest-cov * test
pytest-xdist * test
rpy2 >=3.2.0 test

requirements/requirements.txt pypi

attmap >=0.12.11
divvy >=0.5.0
fastcluster *
jinja2 >=2.10.1
joblib >=0.12.5
matplotlib *
natsort >=6.0.0
numpy >=1.15.0
pandas >=0.25.0
parmap >=1.5.1
patsy >=0.4.1
peppy >=0.30.1
pybedtools >=0.7.10
pysam >=0.13
requests >=2.21.0
scikit-learn >=0.19.1
scipy >=1.0.0
seaborn >=0.10.0
setuptools_scm >=3.3.3
statsmodels >=0.8.0
tqdm >=4.19.5

.github/workflows/test.yaml actions

actions/checkout v1 composite
actions/setup-python v1 composite

Dockerfile docker

gitpod/workspace-full-vnc latest build