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GitHub / naturalis / mtdna-reference-database

Reference database of panels of genomes for population-level aDNA identification

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/naturalis%2Fmtdna-reference-database

Stars: 0
Forks: 0
Open Issues: 0

License: mit
Language: Python
Repo Size: 61.2 MB
Dependencies: 294

Created: over 1 year ago
Updated: 3 months ago
Last pushed: 10 months ago
Last synced: 3 months ago

Files

Readme

Dependencies

doc/environment_requirements.txt pypi

aioeasywebdav =2.4.0=py38h578d9bd_1001
aiohttp =3.8.1=py38h7f8727e_1
aiosignal =1.2.0=pyhd3eb1b0_0
amply =0.1.5=pyhd8ed1ab_0
appdirs =1.4.4=pyhd3eb1b0_0
asciitree =0.3.3=py_2
async-timeout =4.0.2=py38h06a4308_0
attmap =0.13.2=pyhd8ed1ab_0
attrs =21.4.0=pyhd3eb1b0_0
bcftools =1.3.1=h5bf99c6_7
bcrypt =3.2.0=py38h5eee18b_1
binutils_impl_linux-64 =2.38=h2a08ee3_1
binutils_linux-64 =2.38.0=hc2dff05_0
blas =1.0=openblas
bokeh =2.4.3=pyhd8ed1ab_3
boto3 =1.24.28=py38h06a4308_0
botocore =1.27.28=py38h06a4308_0
bowtie2 =2.4.1=py38he513fc3_0
brotlipy =0.7.0=py38h27cfd23_1003
bwidget =1.9.11=1
bzip2 =1.0.8=h7b6447c_0
c-ares =1.18.1=h7f8727e_0
ca-certificates =2022.9.24=ha878542_0
cached-property =1.5.2=hd8ed1ab_1
cached_property =1.5.2=pyha770c72_1
cachetools =4.2.2=pyhd3eb1b0_0
cairo =1.16.0=h19f5f5c_2
certifi =2022.9.24=pyhd8ed1ab_0
cffi =1.15.1=py38h74dc2b5_0
charset-normalizer =2.0.4=pyhd3eb1b0_0
click =8.1.3=unix_pyhd8ed1ab_2
cloudpickle =2.2.0=pyhd8ed1ab_0
coincbc =2.10.5=hcee13e7_1
commonmark =0.9.1=pyhd3eb1b0_0
configargparse =1.4=pyhd3eb1b0_0
connection_pool =0.0.3=pyhd3deb0d_0
cryptography =38.0.1=py38h9ce1e76_0
curl =7.85.0=h5eee18b_0
cycler =0.11.0=pyhd8ed1ab_0
cytoolz =0.12.0=py38h5eee18b_0
dask =2022.11.1=pyhd8ed1ab_0
dask-core =2022.11.1=pyhd8ed1ab_0
dataclasses =0.8=pyh6d0b6a4_7
datrie =0.8.2=py38h27cfd23_0
dbus =1.13.18=hb2f20db_0
decorator =5.1.1=pyhd3eb1b0_0
defusedxml =0.7.1=pyhd3eb1b0_0
distributed =2022.11.1=pyhd8ed1ab_0
docutils =0.18.1=py38h06a4308_3
dpath =2.0.6=py38h578d9bd_1
dropbox =11.14.0=py38h06a4308_0
entrypoints =0.4=pyhd8ed1ab_0
expat =2.4.9=h6a678d5_0
fasteners =0.17.3=pyhd8ed1ab_0
fastp =0.22.0=h2e03b76_0
fastqc =0.11.9=hdfd78af_1
filechunkio =1.8=py_2
filelock =3.6.0=pyhd3eb1b0_0
font-ttf-dejavu-sans-mono =2.37=hd3eb1b0_0
fontconfig =2.13.1=h6c09931_0
freetype =2.12.1=h4a9f257_0
fribidi =1.0.10=h7b6447c_0
frozenlist =1.2.0=py38h7f8727e_0
fsspec =2022.11.0=pyhd8ed1ab_0
ftputil =5.0.4=pyhd8ed1ab_0
future =0.18.2=py38_1
gatk =3.8=hdfd78af_11
gcc_impl_linux-64 =11.2.0=h1234567_1
gcc_linux-64 =11.2.0=h5c386dc_0
gfortran_impl_linux-64 =11.2.0=h1234567_1
gfortran_linux-64 =11.2.0=hc2dff05_0
giflib =5.2.1=h36c2ea0_2
gitdb =4.0.7=pyhd3eb1b0_0
gitpython =3.1.18=pyhd3eb1b0_1
glib =2.69.1=h4ff587b_1
google-api-core =2.10.1=py38h06a4308_0
google-api-python-client =2.55.0=pyhd8ed1ab_0
google-auth =2.6.0=pyhd3eb1b0_0
google-auth-httplib2 =0.1.0=pyhd8ed1ab_1
google-cloud-core =2.3.2=py38h06a4308_0
google-cloud-storage =1.43.0=py38h06a4308_0
google-crc32c =1.1.2=py38h27cfd23_0
google-resumable-media =1.3.1=pyhd3eb1b0_1
googleapis-common-protos =1.56.4=py38h06a4308_0
graphite2 =1.3.14=h295c915_1
grpcio =1.42.0=py38hce63b2e_0
gxx_impl_linux-64 =11.2.0=h1234567_1
gxx_linux-64 =11.2.0=hc2dff05_0
h5py =3.1.0=nompi_py38hafa665b_100
harfbuzz =4.3.0=hd55b92a_0
hdf5 =1.10.6=nompi_h6a2412b_1114
heapdict =1.0.1=py_0
htslib =1.3.1=hc8ab001_4
httplib2 =0.20.4=pyhd8ed1ab_0
icu =58.2=he6710b0_3
idna =3.4=py38h06a4308_0
importlib-metadata =4.11.3=py38h06a4308_0
importlib_resources =5.2.0=pyhd3eb1b0_1
iniconfig =1.1.1=pyhd3eb1b0_0
jinja2 =3.1.2=py38h06a4308_0
jmespath =0.10.0=pyhd3eb1b0_0
joblib =1.2.0=pyhd8ed1ab_0
jpeg =9e=h7f8727e_0
jsonschema =4.16.0=py38h06a4308_0
jupyter_core =4.11.1=py38h06a4308_0
kernel-headers_linux-64 =3.10.0=h57e8cba_10
kiwisolver =1.4.2=py38h295c915_0
krb5 =1.19.2=hac12032_0
lcms2 =2.12=hddcbb42_0
ld_impl_linux-64 =2.38=h1181459_1
lerc =3.0=h295c915_0
libblas =3.9.0=15_linux64_openblas
libcblas =3.9.0=15_linux64_openblas
libcrc32c =1.1.2=h6a678d5_0
libcurl =7.85.0=h91b91d3_0
libdeflate =1.8=h7f8727e_5
libedit =3.1.20210910=h7f8727e_0
libev =4.33=h7f8727e_1
libffi =3.3=he6710b0_2
libgcc-devel_linux-64 =11.2.0=h1234567_1
libgcc-ng =11.2.0=h1234567_1
libgfortran-ng =11.2.0=h00389a5_1
libgfortran5 =11.2.0=h1234567_1
libgomp =11.2.0=h1234567_1
liblapack =3.9.0=15_linux64_openblas
libnghttp2 =1.46.0=hce63b2e_0
libopenblas =0.3.20=h043d6bf_1
libpng =1.6.37=hbc83047_0
libprotobuf =3.20.1=h4ff587b_0
libsodium =1.0.18=h7b6447c_0
libssh2 =1.10.0=h8f2d780_0
libstdcxx-devel_linux-64 =11.2.0=h1234567_1
libstdcxx-ng =11.2.0=h1234567_1
libtiff =4.4.0=hecacb30_0
libuuid =1.0.3=h7f8727e_2
libwebp =1.2.4=h11a3e52_0
libwebp-base =1.2.4=h5eee18b_0
libxcb =1.15=h7f8727e_0
libxml2 =2.9.14=h74e7548_0
locket =1.0.0=pyhd8ed1ab_0
logmuse =0.2.6=pyh8c360ce_0
lz4 =3.1.3=py38h27cfd23_0
lz4-c =1.9.3=h295c915_1
make =4.2.1=h1bed415_1
markupsafe =2.1.1=py38h7f8727e_0
matplotlib-base =3.4.3=py38hf4fb855_1
msgpack-python =1.0.3=py38hd09550d_0
multidict =6.0.2=py38h5eee18b_0
nbformat =5.5.0=py38h06a4308_0
ncurses =6.3=h5eee18b_3
networkx =2.8.8=pyhd8ed1ab_0
numcodecs =0.10.2=py38h6a678d5_0
numexpr =2.8.4=py38hd2a5715_0
numpy =1.22.3=py38h99721a1_2
oauth2client =4.1.3=py_0
openjdk =8.0.152=h7b6447c_3
openssl =1.1.1s=h7f8727e_0
packaging =21.3=pyhd3eb1b0_0
pandas =1.2.5=py38h295c915_0
pango =1.50.7=h05da053_0
paramiko =2.8.1=pyhd3eb1b0_0
partd =1.3.0=pyhd8ed1ab_0
pcre =8.45=h295c915_0
pcre2 =10.37=he7ceb23_1
peppy =0.32.0=pyhd8ed1ab_1
perl =5.26.2=h14c3975_0
pillow =9.2.0=py38hace64e9_1
pip =22.2.2=py38h06a4308_0
pixman =0.40.0=h7f8727e_1
pkgutil-resolve-name =1.3.10=py38h06a4308_0
plac =1.3.4=pyhd3eb1b0_0
pluggy =1.0.0=py38h06a4308_1
ply =3.11=py38_0
pomegranate =0.14.4=py38h9a67853_0
prettytable =3.3.0=pyhd8ed1ab_0
protobuf =3.20.1=py38h295c915_0
psutil =5.9.0=py38h5eee18b_0
pulp =2.6.0=py38h578d9bd_1
py =1.11.0=pyhd3eb1b0_0
pyasn1 =0.4.8=pyhd3eb1b0_0
pyasn1-modules =0.2.8=py_0
pycparser =2.21=pyhd3eb1b0_0
pygments =2.11.2=pyhd3eb1b0_0
pynacl =1.5.0=py38h5eee18b_0
pyopenssl =22.0.0=pyhd3eb1b0_0
pyparsing =3.0.9=py38h06a4308_0
pyrsistent =0.18.0=py38heee7806_0
pysam =0.9.1=py38h07b954b_11
pysftp =0.2.9=pyhd3eb1b0_1
pysocks =1.7.1=py38h06a4308_0
pytest =7.1.2=py38h06a4308_0
python =3.8.13=h12debd9_0
python-dateutil =2.8.2=pyhd3eb1b0_0
python-fastjsonschema =2.16.2=py38h06a4308_0
python-irodsclient =1.1.4=pyhd8ed1ab_0
python_abi =3.8=2_cp38
pytz =2022.1=py38h06a4308_0
pyyaml =6.0=py38h7f8727e_1
r-base =4.2.0=h1ae530e_0
r-bitops =1.0_7=r42h76d94ec_0
r-catools =1.18.2=r42h884c59f_0
r-cli =3.3.0=r42h884c59f_0
r-colorspace =2.0_3=r42h76d94ec_0
r-crayon =1.5.1=r42h6115d3f_0
r-digest =0.6.29=r42h884c59f_0
r-ellipsis =0.3.2=r42h76d94ec_0
r-fansi =1.0.3=r42h76d94ec_0
r-farver =2.1.0=r42h884c59f_0
r-ggplot2 =3.3.6=r42h6115d3f_0
r-glue =1.6.2=r42h76d94ec_0
r-gplots =3.1.3=r42h6115d3f_0
r-gsalib =2.1=r42h142f84f_0
r-gtable =0.3.0=r42h6115d3f_0
r-gtools =3.9.2.1=r42h76d94ec_0
r-isoband =0.2.5=r42h884c59f_0
r-kernsmooth =2.23_20=r42h640688f_0
r-labeling =0.4.2=r42h6115d3f_0
r-lattice =0.20_45=r42h76d94ec_0
r-lifecycle =1.0.1=r42h142f84f_0
r-magrittr =2.0.3=r42h76d94ec_0
r-mass =7.3_57=r42h76d94ec_0
r-matrix =1.4_1=r42h76d94ec_0
r-mgcv =1.8_40=r42h76d94ec_0
r-munsell =0.5.0=r42h6115d3f_0
r-nlme =3.1_157=r42h640688f_0
r-pillar =1.7.0=r42h6115d3f_0
r-pkgconfig =2.0.3=r42h6115d3f_0
r-plyr =1.8.7=r42h884c59f_0
r-r6 =2.5.1=r42h6115d3f_0
r-rcolorbrewer =1.1_3=r42h6115d3f_0
r-rcpp =1.0.8.3=r42h884c59f_0
r-reshape =0.8.9=r42h142f84f_0
r-rlang =1.0.2=r42h884c59f_0
r-scales =1.2.0=r42h6115d3f_0
r-tibble =3.1.7=r42h76d94ec_0
r-utf8 =1.2.2=r42h76d94ec_0
r-vctrs =0.4.1=r42h884c59f_0
r-viridislite =0.4.0=r42h6115d3f_0
r-withr =2.5.0=r42h6115d3f_0
ratelimiter =1.2.0=py_1002
readline =8.2=h5eee18b_0
regex =2022.8.17=pypi_0
requests =2.28.1=py38h06a4308_0
retry =0.9.2=py_0
rich =12.5.1=py38h06a4308_0
rsa =4.7.2=pyhd3eb1b0_1
s3transfer =0.6.0=py38h06a4308_0
samtools =1.3.1=h1b8c3c0_8
scikit-allel =1.3.5=py38h43a58ef_1
scikit-learn =1.0.2=py38h1561384_0
scipy =1.8.1=py38h1ee437e_0
seaborn =0.12.0=py38h06a4308_0
setuptools =65.4.0=py38h06a4308_0
six =1.16.0=pyhd3eb1b0_1
slacker =0.14.0=py_0
smart_open =5.2.1=py38h06a4308_0
smmap =4.0.0=pyhd3eb1b0_0
snakemake =7.9.0=hdfd78af_0
snakemake-minimal =7.9.0=pyhdfd78af_0
sortedcontainers =2.4.0=pyhd8ed1ab_0
sqlite =3.39.3=h5082296_0
stone =3.2.1=pyhd3eb1b0_0
stopit =1.1.2=py_0
sysroot_linux-64 =2.17=h57e8cba_10
tabulate =0.8.10=py38h06a4308_0
tbb =2020.3=hfd86e86_0
tblib =1.7.0=pyhd8ed1ab_0
threadpoolctl =3.1.0=pyh8a188c0_0
tk =8.6.12=h1ccaba5_0
tktable =2.10=h14c3975_0
tomli =2.0.1=py38h06a4308_0
toolz =0.12.0=pyhd8ed1ab_0
toposort =1.7=pyhd8ed1ab_0
tornado =6.1=py38h0a891b7_3
traitlets =5.1.1=pyhd3eb1b0_0
trimmomatic =0.39=hdfd78af_2
typing-extensions =4.3.0=py38h06a4308_0
typing_extensions =4.3.0=py38h06a4308_0
ubiquerg =0.6.2=pyhd8ed1ab_0
uritemplate =4.1.1=pyhd8ed1ab_0
urllib3 =1.26.12=py38h06a4308_0
veracitools =0.1.3=py_0
wcwidth =0.2.5=pyhd3eb1b0_0
wheel =0.37.1=pyhd3eb1b0_0
wrapt =1.14.1=py38h5eee18b_0
xz =5.2.6=h5eee18b_0
yaml =0.2.5=h7b6447c_0
yarl =1.8.1=py38h5eee18b_0
yte =1.5.1=py38h578d9bd_0
zarr =2.13.3=pyhd8ed1ab_0
zict =2.2.0=pyhd8ed1ab_0
zipp =3.8.0=py38h06a4308_0
zlib =1.2.13=h5eee18b_0
zstd =1.5.2=ha4553b6_0