Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: pypi: r-catools

View more package details: https://packages.ecosyste.ms/registries/pypi.org/packages/r-catools

Dependent Repos 15

WeiSong-bio/PocketChangeJ-chipseq_pipeline
  • * requirements.txt

Size: 859 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

zhengzhanye/TF_chipseq_pipeline
  • * requirements.txt

Size: 170 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

kundajelab/chipseq_pipeline
AQUAS TF and histone ChIP-seq pipeline
  • * requirements.txt

Size: 1.51 MB - Last synced: 21 days ago - Pushed: almost 2 years ago

ENCODE-DCC/chip-seq-pipeline2
ENCODE ChIP-seq pipeline
  • * scripts/requirements.spp.txt

Size: 135 MB - Last synced: about 2 months ago - Pushed: 4 months ago

JakeLehle/peakpuller
End-to-end ChIP-seq data analysis pipeline
  • * scripts/requirements.spp.txt

Size: 2.04 MB - Last synced: about 1 year ago - Pushed: about 2 years ago

kundajelab/chip-nexus-pipeline
ChIP-nexus pipeline
  • * conda/requirements.txt

Size: 1.16 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

naturalis/mtdna-reference-database
Reference database of panels of genomes for population-level aDNA identification
  • =1.18.2=r42h884c59f_0 doc/environment_requirements.txt

Size: 61.2 MB - Last synced: 3 months ago - Pushed: 10 months ago

matsengrp/sumrep
Summary statistics for repertoires
  • =1.17.1=r3.4.1_2 requirements.txt

Size: 3.9 MB - Last synced: 2 months ago - Pushed: over 1 year ago

kundajelab/atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
  • * requirements.txt

Size: 13.8 MB - Last synced: 21 days ago - Pushed: almost 2 years ago

sidwekhande/chip-seq-pipeline2 Fork of ENCODE-DCC/chip-seq-pipeline2
ENCODE ChIP-seq pipeline
  • * scripts/requirements.spp.txt

Size: 136 MB - Last synced: 9 months ago - Pushed: over 1 year ago

volpesofi/HLA-correlation
  • =1.18.0=r40h0357c0b_1 R4_requirements.txt

Size: 461 KB - Last synced: 29 days ago - Pushed: almost 3 years ago

biomystery/atacseq_pipeline
  • * requirements.txt

Size: 14.6 MB - Last synced: over 1 year ago

vishwas04/build_my_web
IMAGE TO HTML CODE GENERATION.
  • =1.17.1.2=r36h466af19_0 requirements.txt

Size: 1.09 GB - Last synced: about 1 year ago - Pushed: over 2 years ago

gonzalosm98/scRNA-SeqAnalysis
  • =1.18.2=r40h03ef668_0 requirements.txt

Size: 62.5 KB - Last synced: over 1 year ago - Pushed: over 1 year ago

4dn-dcic/chip-seq-pipeline2 Fork of ENCODE-DCC/chip-seq-pipeline2
4DN chip-seq pipeline, inherited from ENCODE chip-seq pipeline
  • * conda/requirements.txt

Size: 135 MB - Last synced: 4 months ago - Pushed: over 1 year ago

epigen-UCSD/chipseq_pipeline
  • * requirements.txt

Size: 30.4 MB - Last synced: 10 months ago - Pushed: over 4 years ago

epigen-UCSD/atac_seq_pipeline
  • * requirements.txt

Size: 464 KB - Last synced: 10 months ago - Pushed: about 3 years ago

worldsensing/PyLadies_meetup
PyLadies meetup about data science technologies in Python: Pandas, matplotlib, seaborn and sklearn.
  • =1.17.1=r3.4.1_2 requirements.txt

Size: 4.02 MB - Last synced: about 1 year ago - Pushed: over 5 years ago

toddjm/projects
  • =1.17.1=r3.3.1_2 accendero/requirements.txt

Size: 111 MB - Last synced: over 1 year ago - Pushed: over 1 year ago

kundajelab/bds_pipeline_modules
BigDataScript (BDS) pipelines and modules
  • * requirements.txt

Size: 218 KB - Last synced: 8 months ago - Pushed: about 7 years ago

chancharikmitra/spatial_anlys_tumor_het
  • =1.18.2=r40h8619c4b_0 requirements.txt

Size: 64.6 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

GenomicsNX/chip-seq-pipeline2 Fork of ENCODE-DCC/chip-seq-pipeline2
ENCODE ChIP-seq pipeline
  • * scripts/requirements.txt

Size: 135 MB - Last synced: about 2 months ago - Pushed: over 3 years ago

GenomicsNX/atac_dnase_pipelines Fork of kundajelab/atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
  • * requirements.txt

Size: 13.7 MB - Last synced: about 2 months ago - Pushed: almost 7 years ago

GenomicsNX/TF_chipseq_pipeline Fork of kundajelab/chipseq_pipeline
AQUAS TF ChIP-seq pipeline
  • * requirements.txt

Size: 1.12 MB - Last synced: about 2 months ago - Pushed: over 7 years ago

hchetia/atac-seq-pipeline Fork of ENCODE-DCC/atac-seq-pipeline
ENCODE ATAC-seq pipeline
  • * scripts/requirements.txt

Size: 153 MB - Last synced: 11 months ago - Pushed: about 4 years ago

chelab/KAS-pipe Fork of rowyang/KAS-pipe
KAS-pipe is an analysis pipeline for KAS-seq data. KAS-seq allows rapid (within 5 min), sensitive and genome-wide capture and mapping of ssDNA produced by transcriptionally active RNA polymerases, DNA replication or other processes in situ.
  • * requirements.txt

Size: 101 MB - Last synced: 11 months ago - Pushed: about 2 years ago

yzeng-lol/chip-seq-pipeline2 Fork of ENCODE-DCC/chip-seq-pipeline2
ENCODE ChIP-seq pipeline
  • * scripts/requirements.txt

Size: 136 MB - Last synced: 11 months ago - Pushed: about 3 years ago

benayang/chipseq_pipeline Fork of kundajelab/chipseq_pipeline
AQUAS TF and histone ChIP-seq pipeline
  • * requirements.txt

Size: 1.51 MB - Last synced: 10 months ago - Pushed: almost 5 years ago

FunctionalGeneControl/chip-seq-pipeline2 Fork of ENCODE-DCC/chip-seq-pipeline2
  • * conda/requirements.txt

Size: 134 MB - Last synced: 10 months ago - Pushed: over 5 years ago

FunctionalGeneControl/atac-seq-pipeline Fork of ENCODE-DCC/atac-seq-pipeline
ENCODE ATAC-seq pipeline
  • * conda/requirements.txt

Size: 152 MB - Last synced: 10 months ago - Pushed: over 5 years ago

koefoeden/atac-seq-pipeline Fork of ENCODE-DCC/atac-seq-pipeline
ENCODE ATAC-seq pipeline
  • * scripts/requirements.txt

Size: 153 MB - Last synced: 10 months ago - Pushed: over 3 years ago

maximillo/atac_dnase_pipelines Fork of kundajelab/atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
  • * requirements.txt

Size: 13.7 MB - Last synced: 9 months ago - Pushed: over 6 years ago

sidwekhande/atac-seq-pipeline Fork of ENCODE-DCC/atac-seq-pipeline
ENCODE ATAC-seq pipeline
  • * scripts/requirements.spp.txt

Size: 153 MB - Last synced: 9 months ago - Pushed: almost 2 years ago

biogeeker/atac-seq-pipeline Fork of ENCODE-DCC/atac-seq-pipeline
ENCODE ATAC-seq pipeline
  • * scripts/requirements.txt

Size: 153 MB - Last synced: 9 months ago - Pushed: almost 3 years ago

HaniceSun/chip-seq-pipeline2 Fork of ENCODE-DCC/chip-seq-pipeline2
ENCODE ChIP-seq pipeline
  • * scripts/requirements.txt

Size: 136 MB - Last synced: 9 months ago - Pushed: almost 3 years ago

HaniceSun/atac-seq-pipeline Fork of ENCODE-DCC/atac-seq-pipeline
ENCODE ATAC-seq pipeline
  • * scripts/requirements.txt

Size: 153 MB - Last synced: 9 months ago - Pushed: almost 3 years ago

JING-XINXING/atac-seq-pipeline Fork of ENCODE-DCC/atac-seq-pipeline
ENCODE ATAC-seq pipeline
  • * scripts/requirements.spp.txt

Size: 153 MB - Last synced: 9 months ago - Pushed: almost 2 years ago

JING-XINXING/chip-seq-pipeline2 Fork of ENCODE-DCC/chip-seq-pipeline2
ENCODE ChIP-seq pipeline
  • * scripts/requirements.spp.txt

Size: 135 MB - Last synced: 9 months ago - Pushed: almost 2 years ago

bondgeek/bganalytics
  • =1.17.1=r3.2.2_2a conda-requirements.txt

Size: 7.81 KB - Last synced: about 1 year ago - Pushed: almost 8 years ago

zhang-jiankun/atac-seq-pipeline Fork of da-bar/atac-seq-pipeline
ENCODE ATAC-seq pipeline
  • * conda/requirements.txt

Size: 158 MB - Last synced: 9 months ago - Pushed: over 4 years ago

adamtongji/atac_dnase_pipelines Fork of kundajelab/atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
  • * requirements.txt

Size: 13.6 MB - Last synced: 9 months ago - Pushed: about 7 years ago

Dragonlongzhilin/atac-seq-pipeline Fork of ENCODE-DCC/atac-seq-pipeline
ENCODE ATAC-seq pipeline
  • * scripts/requirements.spp.txt

Size: 153 MB - Last synced: 9 months ago - Pushed: over 2 years ago

TangLi025/Liulab
  • * KAS-pipe-master/KAS-pipe-master/requirements.txt
  • * KAS-seq_METTL3_2/KAS-pipe-master/requirements.txt
  • * KAS-seq_METTL3_A375/KAS-pipe-master/requirements.txt

Size: 95.3 MB - Last synced: 9 months ago - Pushed: over 1 year ago

ChangSuBiostats/CSNet_analysis
Code and workflow to reproduce the analysis in CSNet
  • =1.18.2=r42h7525677_1 code/requirements.txt

Size: 3.8 MB - Last synced: 6 months ago - Pushed: 7 months ago

blongho/countries
Get the up-to-date data about countries of the world as presented in https://www.geonames.org/countries/
  • =1.17.1=r3.3.1_2 requirements.txt

Size: 124 KB - Last synced: 24 days ago - Pushed: 6 months ago

NIH-CARD/ANXA11_novel_variant
  • * requirements.txt

Size: 15.6 KB - Last synced: 4 months ago - Pushed: 4 months ago

xiolett/ML1
Central location for storing educational team projects exploring machine learning.
  • =1.17.1.2=r36h6115d3f_0 requirements.txt

Size: 24.7 MB - Last synced: about 2 months ago - Pushed: over 2 years ago