nf-core/mag

Assembly and binning of metagenomes

Language: Nextflow - Size: 34.7 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 237 - Forks: 126

seqan/raptor

A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.

Language: C++ - Size: 4.31 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 52 - Forks: 18

rhysnewell/aviary

A hybrid assembly and MAG recovery pipeline (and more!)

Language: Python - Size: 39 MB - Last synced at: about 17 hours ago - Pushed at: 1 day ago - Stars: 95 - Forks: 14

ShichenXie/scorecardpy

Scorecard Development in python, 评分卡

Language: Python - Size: 195 KB - Last synced at: 3 days ago - Pushed at: 9 months ago - Stars: 747 - Forks: 306

guillermo-navas-palencia/optbinning

Optimal binning: monotonic binning with constraints. Support batch & stream optimal binning. Scorecard modelling and counterfactual explanations.

Language: Python - Size: 10.4 MB - Last synced at: 11 days ago - Pushed at: 2 months ago - Stars: 471 - Forks: 105

ShichenXie/scorecard

Scorecard Development in R, 评分卡

Language: R - Size: 15.8 MB - Last synced at: 13 days ago - Pushed at: about 1 year ago - Stars: 164 - Forks: 62

mariuzka/simplebins

Simplebins makes it easy to bin numeric values into intervals.

Language: Python - Size: 21.5 KB - Last synced at: 1 day ago - Pushed at: 26 days ago - Stars: 0 - Forks: 0

metagentools/GraphBin2

☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs

Language: Python - Size: 89.4 MB - Last synced at: 1 day ago - Pushed at: 2 months ago - Stars: 34 - Forks: 3

uel3/nf-UnO

metagenomics pipeline supporting The UnO Project for identifying pathogens in common across outbreak samples

Language: Nextflow - Size: 62.8 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 0 - Forks: 0

waikato-datamining/wai-bynning

Python library for binning data, generating cross-validation fold pairs and random splits from data.

Language: Python - Size: 77.1 KB - Last synced at: 22 days ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

carstenbauer/BinningAnalysis.jl

Statistical standard error estimation tools for correlated data

Language: Julia - Size: 7.22 MB - Last synced at: about 1 month ago - Pushed at: 10 months ago - Stars: 30 - Forks: 8

CAMI-challenge/AMBER

AMBER: Assessment of Metagenome BinnERs

Language: Python - Size: 13.5 MB - Last synced at: 24 days ago - Pushed at: 4 months ago - Stars: 30 - Forks: 7

abeusher/timehash

An algorithm for creating user configurable, variable-precision sliding windows of time. Useful for binning time values in large collections of data.

Language: C# - Size: 1.23 MB - Last synced at: 7 days ago - Pushed at: over 2 years ago - Stars: 42 - Forks: 14

oguzeroglu/Nearby

Find nearby 3D objects in constant time O(1).

Language: JavaScript - Size: 306 KB - Last synced at: 16 days ago - Pushed at: over 2 years ago - Stars: 107 - Forks: 4

KwanLab/Autometa

Autometa: Automated Extraction of Genomes from Shotgun Metagenomes

Language: Python - Size: 78.9 MB - Last synced at: about 1 month ago - Pushed at: 4 months ago - Stars: 41 - Forks: 15

metagentools/GraphBin

✨🧬 Refined binning of metagenomic contigs using assembly graphs

Language: Python - Size: 54.3 MB - Last synced at: 24 days ago - Pushed at: 2 months ago - Stars: 91 - Forks: 7

Safwan2003/RandomForest_Heart_Disease_Prediction

A machine learning project using Random Forest Classifier to predict heart disease. Includes data preprocessing (with binning), feature selection, and model evaluation.

Language: Jupyter Notebook - Size: 4.86 MB - Last synced at: about 1 month ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

UW-Madison-Bacteriology-Bioinformatics/binning_wf

Pipeline to bin metagenomes into high-quality metagenomic-assembled genomes using DAGman and HTCondor.

Language: Shell - Size: 136 KB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 1 - Forks: 0

arpitnarechania/binguru

BinGuru is an open-source Typescript package to bin/classify data using 18 established binning methods, including a new method, resiliency.

Language: TypeScript - Size: 66.4 KB - Last synced at: 13 days ago - Pushed at: over 1 year ago - Stars: 16 - Forks: 0

erikhuizinga/honeycomb

Tools for hexagonal binning (honeycomb plot) and visualisation.

Language: MATLAB - Size: 32.2 KB - Last synced at: about 1 month ago - Pushed at: about 5 years ago - Stars: 6 - Forks: 0

RobWiederstein/lifeExpectancy

Quarto dashboard on binning and coloring strategies for choropleth maps

Language: JavaScript - Size: 4.64 MB - Last synced at: 3 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

Khushi130404/Binning-Binarization

This project demonstrates binning and binarization on the Titanic dataset, comparing results with and without numeric encoding. Visualizations highlight the transformations and their impact on survival analysis.

Language: Jupyter Notebook - Size: 108 KB - Last synced at: 3 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

ast0815/remu

ReMU - Response Matrix Utilities

Language: Python - Size: 114 MB - Last synced at: 17 days ago - Pushed at: about 2 months ago - Stars: 5 - Forks: 1

FelipeSE98/optimal-monotonic-woe-binning

Language: Jupyter Notebook - Size: 794 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

natashabatalha/PandExo

A Community Tool for Transiting Exoplanet Science with the JWST & HST

Language: Jupyter Notebook - Size: 494 MB - Last synced at: 13 days ago - Pushed at: 8 months ago - Stars: 38 - Forks: 40

anuradhawick/MetaBCC-LR

Reference-free Binning of Metagenomics Long Reads using Coverage and Composition

Language: Python - Size: 441 KB - Last synced at: 28 days ago - Pushed at: 8 months ago - Stars: 20 - Forks: 0

Yash22222/Data-Analysis-With-Python

This repository provides a practical introduction to data acquisition and analysis using Pandas. It covers loading datasets, exploring data, manipulating data, and gaining insights through statistical summaries. Ideal for beginners, it offers code examples and explanations to enhance your data manipulation skills using Pandas for Python.

Language: Jupyter Notebook - Size: 2.67 MB - Last synced at: 3 months ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

laxeye/pyYAMB

Express metagenome binning

Language: Python - Size: 65.4 KB - Last synced at: 15 days ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

wanghui5801/usmerge

A tool package for one-dimensional data clustering.

Language: Python - Size: 243 KB - Last synced at: 14 days ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

ECheynet/binAveraging

Averaging noisy data into bins

Language: MATLAB - Size: 151 KB - Last synced at: 2 months ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 1

dionhaefner/bayesian-histograms

Bayesian histograms for estimation of binary rare event rates, with fully automated bin pruning :bar_chart:

Language: Jupyter Notebook - Size: 256 KB - Last synced at: 24 days ago - Pushed at: over 3 years ago - Stars: 28 - Forks: 2

francescoalemanno/BayesHistogram.jl

pure Julia package for optimal histogram binning, based on piecewise constant model.

Language: Julia - Size: 670 KB - Last synced at: 1 day ago - Pushed at: over 2 years ago - Stars: 41 - Forks: 3

rsquaredacademy/rbin

Tools for binning data

Language: R - Size: 4.8 MB - Last synced at: 19 days ago - Pushed at: 6 months ago - Stars: 13 - Forks: 3

nunofonseca/msi

Language: Shell - Size: 5.82 MB - Last synced at: 5 months ago - Pushed at: about 2 years ago - Stars: 5 - Forks: 2

jackieblaum/eclipsebin

EclipseBin is a Python package designed for binning light curves of eclipsing binary stars using a non-uniform binning scheme. The package focuses on better capturing the details of eclipses by allocating more bins within the eclipse regions, making it ideal for light curves with narrow eclipses.

Language: Python - Size: 182 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 1 - Forks: 0

qiyunlab/binarena

BinaRena: Interactive Visualization and Binning of Metagenomic Contigs

Language: JavaScript - Size: 9.23 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 27 - Forks: 6

ekenes/binning-experiments

Various apps exploring client-side binning in the ArcGIS JS API.

Language: HTML - Size: 658 KB - Last synced at: about 2 months ago - Pushed at: 9 months ago - Stars: 5 - Forks: 1

aarryasutar/Credit_EDA

This project focuses on cleaning and analyzing a loan application dataset to gain insights into the factors influencing loan defaults. Through systematic data cleaning, visualization, and merging with previous application data, it provides a robust foundation for further predictive modeling.

Language: Jupyter Notebook - Size: 1.42 MB - Last synced at: 3 months ago - Pushed at: 10 months ago - Stars: 1 - Forks: 0

AmbreenMahhoor/What-Is-Binning-And-Binarization

Language: Jupyter Notebook - Size: 46.9 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

riddhigupta1110/DataWarehousingAndMining-V-MU-CSE

Codes for Practical experiments of Data Warehousing and Mining (Semester V - Computer Engineering - Mumbai University)

Language: Python - Size: 24.4 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 1 - Forks: 0

metagentools/MetaCoAG

🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs

Language: Python - Size: 156 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 42 - Forks: 3

dyxstat/ImputeCC

ImputeCC enhances integrative Hi-C-based metagenomic binning through constrained random-walk-based imputation

Language: Python - Size: 4.9 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 1 - Forks: 1

LeonDlugosch/MetaSeq-Toolkit

This pipeline is intended to be a convenient way to work though large sets of metagenomic or metatranscriptiomic datasets while also retaining high analytical flexibility due to retained intermediate results that might be useful outside of the intended purpose.

Language: Shell - Size: 102 MB - Last synced at: 5 days ago - Pushed at: over 2 years ago - Stars: 7 - Forks: 2

PMassicotte/l3bin

Support the NASA / GlobColour / CCI ISIN grid used for MODIS L3BIN satellite products.

Language: Rust - Size: 12.7 KB - Last synced at: about 1 month ago - Pushed at: 12 months ago - Stars: 1 - Forks: 0

songweizhi/Binning_refiner

Improving genome bins through the combination of different binning programs

Language: Python - Size: 87.6 MB - Last synced at: about 12 hours ago - Pushed at: over 2 years ago - Stars: 31 - Forks: 4

BKR7E/DataBinner

Data auto-binning algorithm- takes x,y,z data and organizes it in x and y user prescribed bins, auto-interpolates data gaps, then plots z

Language: Python - Size: 112 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

mayankmtg/MassSpecPeakDetection

Peak Detection algorithm refine for testing the number of peaks based on different approaches

Language: Python - Size: 25.7 MB - Last synced at: about 1 year ago - Pushed at: almost 7 years ago - Stars: 1 - Forks: 0

1feres1/pynmranalysis

A Python Toolbox for preprocessing and analysing NMR data

Language: Jupyter Notebook - Size: 7.18 MB - Last synced at: 6 days ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 1

marbl/binnacle

Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins

Language: Python - Size: 3.26 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 9 - Forks: 2

Mateko/ScoreWise

Scorecard tools

Language: Python - Size: 7.81 KB - Last synced at: 2 months ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

DivyaKrishnani/Data-Preprocessing-with-Python

Implementation of Data Preprocessing techniques such as handling missing values, noise smoothing, PCA, etc.

Language: Jupyter Notebook - Size: 1.64 MB - Last synced at: 5 months ago - Pushed at: over 6 years ago - Stars: 8 - Forks: 11

pirovc/metameta

Language: Python - Size: 14.2 MB - Last synced at: 12 months ago - Pushed at: over 5 years ago - Stars: 23 - Forks: 10

claczny/VizBin

Repository of our application for human-augmented binning

Language: Java - Size: 214 MB - Last synced at: about 1 month ago - Pushed at: about 4 years ago - Stars: 27 - Forks: 14

Evan-Mucciolo/pandas-challenge

Mock exercise as Chief Data Scientist analyzing student standardized testing data for school board.

Language: Jupyter Notebook - Size: 471 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

fjebaker/Buckets.jl

🪣 Fast, parallel, low-allocation algorithms for binning numbers.

Language: Julia - Size: 38.1 KB - Last synced at: 7 days ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 1

Yash22222/MY-TP-PROJECTS

I am Uploading My Short simple projects on Python, Java, C++ & C Language in this library.

Language: Jupyter Notebook - Size: 7.93 MB - Last synced at: 25 days ago - Pushed at: over 1 year ago - Stars: 4 - Forks: 0

danillo-alvarenga/zeuss

recogniZing gEnome seqUences in metagenomic aSSemblies

Language: Python - Size: 19.5 KB - Last synced at: over 1 year ago - Pushed at: almost 8 years ago - Stars: 2 - Forks: 0

nidhikargathra/HeartCare

An intelligent system to predict probability of heart diseases by using classification algorithms. View README for details.

Language: Java - Size: 12.4 MB - Last synced at: over 1 year ago - Pushed at: almost 7 years ago - Stars: 2 - Forks: 1

muhammadravi251001/credit-scoring

Code for classifying whether someone can repay their loan to a banking institution using a supervised learning approach: Binning and Logistic Regression.

Language: Python - Size: 9.77 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

ellietoulabi/DataMiningCourseHomeworks

Solutions to data mining course homeworks.

Language: Jupyter Notebook - Size: 20.2 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

Emmanuel-R8/SMBinning

Scoring Modeling and Optimal Binning

Language: R - Size: 346 KB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0

Amshra267/Cassandra-Udyam

Contains our Approach for the competition organized at Udyam'21

Language: Jupyter Notebook - Size: 3.83 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 12 - Forks: 2

darenr/optbinning Fork of guillermo-navas-palencia/optbinning

Optimal binning: monotonic binning with constraints

Size: 1.09 MB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0

gipert/bayesian-blocks

Julia and C++ Implementations of the bayesian blocks algorithm https://arxiv.org/abs/1207.5578

Language: C++ - Size: 2.47 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 4

Hamim-Hussain/Analysing-School-District-Data-with-Pandas

My evaluation of the school district's performance included the examination of standardised test results in math and reading, school budgets, and grade point averages. The information was organised by school size and type, with an emphasis on district and charter schools, using pandas.

Language: Jupyter Notebook - Size: 864 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

guhjy/rbin Fork of rsquaredacademy/rbin

Tools for binning data

Language: R - Size: 1.15 MB - Last synced at: almost 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

Tscholten1/Map-of-U.S-Electric-Power-Generation

Map of U.S. Electric Power Generation by Fuel Source

Language: CSS - Size: 218 KB - Last synced at: almost 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

k-palffy/cytobins

An R package for simple, customizable binning of flow cytometric data

Language: R - Size: 4.29 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

Arkadiy-Garber/SprayNPray

Rapid and simple taxonomic profiling of genome and metagenome contigs

Language: Python - Size: 205 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 25 - Forks: 4

martinnff/Binning

Binning method to allow performing point cloud classification tasks on low resources machines.

Language: C++ - Size: 671 KB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

envmetagen/metabinkit

Set of programs to perform taxonomic binning.

Language: R - Size: 6.38 MB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 1

tomas-o-dev/FeatureFilter

Quick Layered Correlation-based Feature Filtering

Language: Python - Size: 7.02 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

mhyfritz/bin-data

Partition data into given number of chunks and pick a representative value for each chunk.

Language: JavaScript - Size: 396 KB - Last synced at: 24 days ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

podondra/data-preprocessing

data preprocessing examples

Language: Jupyter Notebook - Size: 4.64 MB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 4 - Forks: 4

janukobytsch/big-data-notebook

Language: Jupyter Notebook - Size: 64.5 KB - Last synced at: about 2 years ago - Pushed at: over 9 years ago - Stars: 0 - Forks: 0

Keris/yasc

Yet Another Score Card

Language: Python - Size: 71.3 KB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 3 - Forks: 0

ggirelli/bioTrackBinner 📦

Binning biological data tracks and producing RDS containing data.tables

Language: R - Size: 45.9 KB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 0

lingumd/School_District_Analysis

Updated test score data and school district analysis using Python.

Language: Jupyter Notebook - Size: 784 KB - Last synced at: 2 months ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

bochen0909/hsds-upcxx Fork of Lizhen0909/SpaRC-MPI

hierarchical clustering of DNA sequence using upcxx

Language: C++ - Size: 1.73 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

SujalXplores/Mega-Calculator

All type of calculators like Cuboid (4D), Binning, Chi-square test, Red-black tree, Binary search tree, Longest Common Sub Sequence, Master Theorm, Heap Sort, Decision Theory at one place ✨

Language: HTML - Size: 592 KB - Last synced at: 6 days ago - Pushed at: about 4 years ago - Stars: 3 - Forks: 0

Keris/creditscoring

Credit scoring toolkit with python

Language: Python - Size: 18.6 KB - Last synced at: 5 days ago - Pushed at: over 5 years ago - Stars: 5 - Forks: 0

miwermi/school-district-analysis

School district performance analysis using Python, Pandas, +Jupyter Notebook.

Language: Jupyter Notebook - Size: 2.31 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

fungs/thesis-phd

PhD thesis: Computational Methods for Taxonomic Annotation and Genome Reconstruction in Metagenomics

Language: TeX - Size: 26.1 MB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 2 - Forks: 0

nani757/Binning-Discretization-_-Quantile-Binning-_-KMeans-Binning

these concepts are useful for converting numerical data to categorical

Language: Jupyter Notebook - Size: 73.2 KB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

MengChiehLiu/Entropy-Based-Binning

The function here is designed for binning continuous independent variables, in the way minimizing total entropy of corresponding response. Also this function can plot the change of the entropy in the process.

Language: Jupyter Notebook - Size: 184 KB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

brycehenson/fast_sorted_mask

fast masking of ordered vectors based on binary search

Language: MATLAB - Size: 1.26 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 0

Navadeeppasala/Data-Analysis-with-Python

Why data analysis? , How to understand the problem, what to do for data analysis, and how clean the data for building Machine Learning models

Language: Jupyter Notebook - Size: 201 KB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0

QuentinLetourneur/Let-it-bin

Optimize workflow for binning metagenomic short reads from multiple samples

Language: Nextflow - Size: 193 KB - Last synced at: about 2 years ago - Pushed at: about 5 years ago - Stars: 5 - Forks: 2

Towhid1/Feature-Engineering-Basics

Feature engineering is the process of transforming raw data into features. Here are some basic ideas about feature engineering.

Language: Jupyter Notebook - Size: 66.4 MB - Last synced at: about 1 year ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0

ToniWestbrook/mitobin

Taxonomic classification and read binning of mitochondrial DNA

Language: Python - Size: 25.4 KB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

ScratchyCode/Photographic-data-binning

Photographic binning

Language: C - Size: 2.1 MB - Last synced at: 10 months ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0

karanmitroo/stunning-chainsaw

A simplified algorithm to cluster mixed-type data(numerical and categorical).

Language: Python - Size: 521 KB - Last synced at: about 2 years ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 0

claczny/busybee_web

Repository for BusyBee Web - Web-based deconvolution of metagenomic data by bootstrapped supervised binning

Size: 1.03 MB - Last synced at: about 2 months ago - Pushed at: about 8 years ago - Stars: 2 - Forks: 0