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GitHub / metagentools / GraphBin2
☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/metagentools%2FGraphBin2
Stars: 27
Forks: 1
Open Issues: 11
License: bsd-3-clause
Language: Python
Repo Size: 78 MB
Dependencies:
40
Created: about 4 years ago
Updated: 16 days ago
Last pushed: 16 days ago
Last synced: 16 days ago
Topics: assembly-graphs, binning, contigs, metagenomics, overlapped-binning
Files
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Readme
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Dependencies
.github/workflows/codeql.yml
actions
- actions/checkout v3 composite
- github/codeql-action/analyze v2 composite
- github/codeql-action/autobuild v2 composite
- github/codeql-action/init v2 composite
.github/workflows/testing.yml
actions
- actions/checkout v3 composite
- actions/setup-python v3 composite
- codecov/codecov-action v4.0.1 composite
pyproject.toml
pypi
- biopython *
- click *
- python-igraph *
- scipy *
- tqdm *
- actions/checkout v3 composite
- actions/setup-python v3 composite
- pypa/gh-action-pypi-publish 27b31702a0e7fc50959f5ad993c78deac1bdfc29 composite
environment.yml
conda
- Jinja2 >=2.10.2
- Markdown >=3.2.1,<3.4
- PyYAML >=5.2
- babel >=2.9.0
- click >=7.0
- ghp-import >=1.0
- importlib_metadata >=4.3
- jinja2 ==3.1.4
- mdx_gh_links >=0.2
- mergedeep >=1.3.4
- mkdocs >=1.3.1
- mkdocs-material *
- mkdocs-redirects >=1.0.1
- packaging >=20.5
- pygments >=2.12
- pymdown-extensions *
- pyyaml_env_tag >=0.1
- watchdog >=2.0.0