brsynth/galaxytools

Galaxy wrappers of SynBioCAD tools suite

Language: HTML - Size: 39.8 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 0 - Forks: 0

JazzEd-EdTech/biojava Fork of violethaze74/biojava

:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.

Size: 46.5 MB - Last synced: 29 days ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

galaxyproject/gxadmin

Handy command line utility for Galaxy administrators :rocket:

Language: Shell - Size: 1.75 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 22 - Forks: 26

erickaguirre96/DAP_Bokeh_View

Bokeh visualization for output DAP MUSE data cubes.

Language: Python - Size: 8.79 KB - Last synced: about 2 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

ARTbio/AnalyseGenome

A repository for the training material of the course "Analyse des Génomes"

Language: Shell - Size: 22 MB - Last synced: about 2 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

zemmali/ELK-Stack

Elastic Stack

Size: 6.84 KB - Last synced: about 2 months ago - Pushed: over 6 years ago - Stars: 1 - Forks: 0

workflow4metabolomics/w4m-docker

Docker for Workflow4Metabolomics Galaxy platform.

Language: Dockerfile - Size: 8.98 MB - Last synced: 26 days ago - Pushed: almost 5 years ago - Stars: 5 - Forks: 6

workflow4metabolomics/camera.archive 📦

🚫 move to https://github.com/workflow4metabolomics/tools-metabolomics

Language: R - Size: 94.7 MB - Last synced: 26 days ago - Pushed: almost 5 years ago - Stars: 1 - Forks: 1

workflow4metabolomics/tools-metabolomics

Galaxy tools for metabolomics maintained by Workflow4Metabolomics

Language: R - Size: 1.31 GB - Last synced: 26 days ago - Pushed: about 1 month ago - Stars: 23 - Forks: 22

workflow4metabolomics/workflow4metabolomics

Workflow4Metabolomics meta repository

Language: HTML - Size: 12.5 MB - Last synced: 26 days ago - Pushed: over 2 years ago - Stars: 10 - Forks: 4

vy-phung/genomic-data-science-project-about-fetus-and-adult

My personal genomic data science project

Language: Jupyter Notebook - Size: 15.8 MB - Last synced: 2 months ago - Pushed: over 2 years ago - Stars: 2 - Forks: 0

nucleosome-dynamics/nucleosome_dynamics_galaxy

Nucleosome Dynamics wrappers for Galaxy platform

Language: HTML - Size: 92.9 MB - Last synced: 3 months ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

C3BI-pasteur-fr/ngphylogeny-django

Language: HTML - Size: 6.86 MB - Last synced: 30 days ago - Pushed: about 1 year ago - Stars: 27 - Forks: 22

maim228/star-wars

Language: CSS - Size: 2.49 MB - Last synced: 5 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

destairdenbi/galaxy-atoms

de.STAIR Galaxy atoms for assisted workflow generation of RNA-Seq and BS-Seq data analyses

Language: HTML - Size: 1.26 MB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 4

bilille/galaxy-mixomics-blocksplsda

Galaxy wrappers for the block.splsda, plotIndiv and plotVar functions from the mixOmics R package

Language: R - Size: 96.7 KB - Last synced: 7 months ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

tripal/tripal_galaxy

This module is for integration of Tripal and a remote Galaxy Instance.

Language: PHP - Size: 5.63 MB - Last synced: about 2 months ago - Pushed: about 1 year ago - Stars: 2 - Forks: 4

zipho/orbit

Galaxy streamline web interface for dataset upload and metadata management

Size: 4.88 KB - Last synced: 8 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

combat-sars-cov-2/workbench-cli

Workbench-cli is a command-line shell and scripting interface for Galaxy, Irida and other various popular bioinformatics platforms, envisioned to be a Swiss Army knife designed to make life easier for those who love hacking away at the command prompt.

Language: Python - Size: 276 KB - Last synced: 8 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 1

galaxyproject/galaxy-language-server

Galaxy Language Server to help in Galaxy (https://galaxyproject.org/) tool wrappers development.

Language: Python - Size: 6.52 MB - Last synced: about 1 month ago - Pushed: about 2 months ago - Stars: 22 - Forks: 10

jayashree2699/Galaxy-Classification

Galaxy classification using Decision Tree and Random Forest Classifiers

Language: Python - Size: 131 KB - Last synced: 9 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

Amit-H/Mining-for-microbes

Reusing publicly available whole transcriptome data to determine the state of the microbiome at time of sampling.

Size: 1000 Bytes - Last synced: 10 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

crs4/Galaxy4Developers

Training Course on Galaxy for Bioinformatics tool developers

Language: CSS - Size: 27.5 MB - Last synced: 10 months ago - Pushed: over 6 years ago - Stars: 7 - Forks: 1

elizabethlin6/analyzing-galactic-environments

My CSE 160 final project on analyzing galaxies and their characteristics.

Language: CSS - Size: 3.92 MB - Last synced: 10 months ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

refinery-platform/refinery-platform

The Refinery Platform is a data management, analysis and visualization system for bioinformatics and computational biology applications. The platforms consists of three major components: a data repository with rich metadata capabilities, a workflow engine based on the popular Galaxy system, and visualization tools to support the exploration and interpretation of results at all stages of the analysis process.

Language: Python - Size: 124 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 102 - Forks: 24

COMBAT-TB/tbvcfreport

Generate an interactive HTML-based report from M.tb SnpEff annotated VCF(s)

Language: HTML - Size: 1.16 MB - Last synced: 16 days ago - Pushed: about 2 years ago - Stars: 2 - Forks: 2

fredericlemoine/golaxy

golaxy : interacting with Galaxy in Go

Language: Go - Size: 65.4 KB - Last synced: 10 months ago - Pushed: about 1 year ago - Stars: 5 - Forks: 0

JoelRomero97/Sistemas-Digitales

Implementaciones para diseño de sistemas digitales, comenzando por Flip Flops, registros, autómatas (Máquinas de Moore y Máquinas de Mealy), memorias ROM y sensores de presencia, utilizando para cada uno de estos, distintos contadores (anillo, década, etc).

Language: VHDL - Size: 4.22 MB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 5 - Forks: 1

SANBI-SA-archive/galaxy Fork of galaxyproject/galaxy 📦

SANBI Galaxy (Deployed into SANBI servers): Data intensive science for everyone.

Language: Python - Size: 233 MB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0

COMBAT-TB/irida-pipeline-plugins 📦

Galaxy pipelines as plugin for IRIDA intergration

Language: Java - Size: 7.43 MB - Last synced: 12 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 1

TailorDev/galaxy-tourbuilder 📦

🔝 The amazing Galaxy Tour Builder web extension. // See demo 👉

Language: JavaScript - Size: 11.7 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 17 - Forks: 6

COMBAT-TB/vcf_snps_utils 📦

Custom command line utility tools to manipulate vcf files

Language: Python - Size: 12.7 MB - Last synced: 12 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

anuprulez/galaxy_tool_recommendation

Galaxy tool recommendation

Language: Jupyter Notebook - Size: 942 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 2 - Forks: 3

ndopj/tesp-api

An Open-source implementation of a task execution engine based on the TES standard distributing executions to services exposing Pulsar application.

Language: Python - Size: 74.2 KB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 2 - Forks: 2

H3X-C0DE/The-Dark-Galaxy

Group Assignment for Kodehode October.2022

Language: HTML - Size: 10.1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 1

COMBAT-TB/irida-galaxy-deploy

:whale: Deploying IRIDA and Galaxy all in one server/VM using Docker or Terraform

Language: HTML - Size: 492 KB - Last synced: 12 months ago - Pushed: almost 2 years ago - Stars: 3 - Forks: 4

COMBAT-TB/combat-tb.github.io

COMBAT-TB Website

Language: CSS - Size: 14 MB - Last synced: 12 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 2

destairdenbi/training-material

Training material of every de.STAIR de.NBI training event, on-site support training, shared on-line videos and scripts

Language: HTML - Size: 606 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 7

Pater999/UNITN-machine-learning-project-2021

Repository contente la mia soluzione al progetto dell'esame di Introduction To Machine Learning svolto nel 2021.

Language: Jupyter Notebook - Size: 10.4 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

ADGSTUDIOS/GalaxyML

Data Mining and Virtual Observatory : Identifying galaxies, Quasars and stars in multi-Wavelength surveys.

Language: Jupyter Notebook - Size: 338 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1

destairdenbi/galaxy-workflow-generator Fork of bgruening/docker-galaxy-ngs-preprocessing

:whale::bar_chart::books: Galaxy Docker image for assisted generation of RNA-Seq and BS-Seq workflows

Language: HTML - Size: 2.59 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 1 - Forks: 4

usegalaxy-eu/pulsar-infrastructure-playbook

Language: HTML - Size: 70.3 KB - Last synced: 23 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 8

cumbof/galaxy-scraper-extension

Chrome extension that automatically scrape and send data from a webpage to the current history of a Galaxy instance.

Language: JavaScript - Size: 703 KB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 4 - Forks: 1

bagnacan/destair-training-material Fork of destairdenbi/training-material

Training material of every de.STAIR de.NBI training event, on-site support training, shared on-line videos and scripts

Language: TeX - Size: 573 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

bagnacan/destair-galaxy-workflow-generator Fork of destairdenbi/galaxy-workflow-generator

:whale::bar_chart::books: Galaxy Docker image for assisted generation of RNA-Seq and BS-Seq workflows

Language: HTML - Size: 2.59 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

anuprulez/similar_galaxy_workflow

Predict tools in Galaxy workflow (directed graph)

Language: Jupyter Notebook - Size: 634 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 1 - Forks: 3

torfinnnome/galaxy-admin-training-barcelona-2020

My Ansible training directories

Language: Shell - Size: 263 KB - Last synced: 10 months ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

ybgirgin3/Space-Parallax

Part Of Space Animation

Language: CSS - Size: 138 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 1 - Forks: 0

SANBI-SA/galaxy-africa-website

The Galaxy Africa Website

Language: JavaScript - Size: 9.19 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 4

COMBAT-TB/neo4j-galaxy-ie

:whale: Neo4j Galaxy IE

Language: Shell - Size: 8.55 MB - Last synced: 12 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 2

nevencaplar/Main-Sequence-Variability

Code and data supporting paper: Stochastic modeling of star-formation histories I: the scatter of the star-forming main sequence (2019MNRAS.487.3845C)

Language: Jupyter Notebook - Size: 51.8 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 1 - Forks: 0

domenico-somma/Papillon

A python module to read and plot Galaxy RNA-seq data

Language: Python - Size: 271 KB - Last synced: 6 days ago - Pushed: over 5 years ago - Stars: 1 - Forks: 1

gmauro/ansible-galaxy-os Fork of galaxyproject/ansible-galaxy-os

An Ansible role is for configuring the base operating system useful for running Galaxy.

Size: 69.3 KB - Last synced: 23 days ago - Pushed: about 5 years ago - Stars: 0 - Forks: 1

COMBAT-TB/combat-tb-gx-pipelines

Backup of Galaxy Pipelines

Size: 18.6 KB - Last synced: 12 months ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

gmauro/ansible-gx-extras

Ansible role to configure several production services as nginx, uwsgi and supervisor.

Language: HTML - Size: 43 KB - Last synced: 23 days ago - Pushed: over 5 years ago - Stars: 0 - Forks: 1

workflow4metabolomics/normalization

Normalization for Galaxy

Language: R - Size: 623 KB - Last synced: 26 days ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

ELIXIR-IIB-training/Galaxy

Language: CSS - Size: 19.1 MB - Last synced: 23 days ago - Pushed: over 7 years ago - Stars: 2 - Forks: 1

refinery-platform/split-paired-collection

A Galaxy: https://galaxyproject.org/ tool that takes an input Dataset Collection and returns two distinct outputs

Size: 8.79 KB - Last synced: about 1 month ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

metamaden/seq_answers

Sequencing data preprocessing

Language: R - Size: 1.44 MB - Last synced: about 1 year ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

anuprulez/similar_galaxy_tools

Finding similarity in Galaxy tools

Language: Python - Size: 1.33 GB - Last synced: about 1 year ago - Pushed: almost 6 years ago - Stars: 2 - Forks: 1

refinery-platform/clodius-galaxy

Galaxy tool wrapper around Clodius: https://github.com/hms-dbmi/clodius

Size: 292 KB - Last synced: about 1 month ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

workflow4metabolomics/probmetab

ProbMetab For Galaxy

Language: R - Size: 14.1 MB - Last synced: 26 days ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0