Ecosyste.ms: Repos
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GitHub / galaxyproject / galaxy
Data intensive science for everyone.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/galaxyproject%2Fgalaxy
Stars: 1,315
Forks: 961
Open Issues: 2,210
License: other
Language: Python
Repo Size: 616 MB
Dependencies:
2,945
Created: about 9 years ago
Updated: 3 days ago
Last pushed: 3 days ago
Last synced: 3 days ago
Commit Stats
Commits: 57688
Authors: 525
Mean commits per author: 109.88
Development Distribution Score: 0.875
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/galaxyproject/galaxy
Topics: bioinformatics, dna, genomics, hacktoberfest, ngs, pipeline, science, sequencing, usegalaxy, workflow, workflow-engine
Files
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Readme
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Dependencies
- copy-webpack-plugin ^11.0.0 development
- file-loader ^6.2.0 development
- webpack ^5.75.0 development
- webpack-cli ^4.10.0 development
- @galaxyproject/new_user_welcome ^1.0.6
- actions/checkout v3 composite
- actions/setup-python v4 composite
- nanasess/setup-chromedriver v2 composite
- actions/cache v3 composite
- actions/checkout v3 composite
- actions/setup-python v4 composite
- eWaterCycle/setup-apptainer v2 composite
- pytest * test
- node 0.11.13 build
- python 2.7 build
- aladin-lite-galaxy ^1.0.0
- cpy-cli ^5.0.0
- parcel-bundler ^1.4.1
- parcel ^2.9.3 development
- @h5web/app ^8.0.0
- buffer ^6.0.3
- normalize.css ^8.0.1
- react 18.2.0
- react-dom 18.2.0
- commander ~2.20.3
- eventemitter3 3.1.2
- http-proxy 1.18.1
- node-watch 0.7.0
- sqlite3 4.2.0
- @graphql-codegen/cli ^2.16.1 development
- @graphql-codegen/client-preset ^1.2.3 development
- @quasar/vite-plugin ^1.0.4 development
- @types/node ^16.6.1 development
- @typescript-eslint/eslint-plugin ^5.47.1 development
- @typescript-eslint/parser ^5.47.1 development
- @vitejs/plugin-vue ^1.6.0 development
- @vue/compiler-sfc ^3.2.6 development
- @vue/eslint-config-typescript ^11.0.2 development
- concurrently ^7.6.0 development
- eslint ^8.30.0 development
- eslint-config-prettier ^8.5.0 development
- eslint-plugin-prettier ^4.2.1 development
- eslint-plugin-vue ^9.8.0 development
- eslint-plugin-vuejs-accessibility ^2.0.0 development
- prettier ^2.8.1 development
- sass ^1.32.0 development
- typescript ^4.3.2 development
- vite ^4.4.9 development
- vue-eslint-parser ^9.1.0 development
- vue-tsc ^1.0.16 development
- @apollo/client ^3.7.3
- @quasar/extras ^1.12.4
- @vue/apollo-composable ^4.0.0-beta.1
- @vue/apollo-option ^4.0.0-alpha.20
- axios ^1.2.1
- date-fns ^2.29.3
- date-fns-tz ^1.3.7
- e ^0.2.2
- graphql ^16.6.0
- graphql-tag ^2.12.6
- openapi-typescript-fetch ^1.1.3
- pinia ^2.0.28
- quasar ^2.5.0
- vue ^3.2.6
- vue-router 4
package.json
npm
- @galaxyproject/galaxy-client ^23.1.1
- cpy-cli ^5.0.0
- azure-storage ==0.32.0
- boto3 *
- chronos-python ==1.2.1
- custos-sdk *
- drmaa *
- fluent-logger *
- fs-basespace *
- fs-gcsfs *
- fs.anvilfs *
- fs.dropboxfs >=1.0
- fs.googledrivefs *
- fs.onedatarestfs *
- fs.sshfs *
- fs.webdavfs >=0.4.2
- galaxycloudrunner *
- google-cloud-storage >=2.8.0
- hvac *
- influxdb *
- kamaki *
- ldap3 ==2.9.1
- mysqlclient *
- pbs_python *
- pkce *
- psycopg2-binary ==2.9.5
- pygithub *
- pykube ==0.15.0
- python-gitlab >=2.10.0
- python-irodsclient ==1.1.3
- python-ldap ==3.4.0
- python-pam *
- sentry-sdk *
- statsd *
- tensorflow ==2.9.3
- total-perspective-vortex >=2.3.2,<3
- watchdog *
- weasyprint *
- aiohttp ==3.9.1 development
- aiosignal ==1.3.1 development
- alabaster ==0.7.13 development
- amqp ==5.2.0 development
- anyio ==4.1.0 development
- ase ==3.22.1 development
- async-timeout ==4.0.3 development
- attrs ==23.1.0 development
- axe-selenium-python ==2.1.6 development
- babel ==2.14.0 development
- backports-zoneinfo ==0.2.1 development
- billiard ==4.2.0 development
- black ==23.12.0 development
- build ==1.0.3 development
- cachecontrol ==0.13.1 development
- celery ==5.3.6 development
- certifi ==2023.11.17 development
- cffi ==1.16.0 development
- charset-normalizer ==3.3.2 development
- click ==8.1.7 development
- click-didyoumean ==0.3.0 development
- click-plugins ==1.1.1 development
- click-repl ==0.3.0 development
- codespell ==2.2.6 development
- colorama ==0.4.6 development
- contourpy ==1.1.1 development
- coverage ==7.3.3 development
- cryptography ==41.0.7 development
- cwltest ==2.4.20231031143732 development
- cycler ==0.12.1 development
- darker ==1.7.2 development
- defusedxml ==0.7.1 development
- deprecated ==1.2.14 development
- docutils ==0.18.1 development
- exceptiongroup ==1.2.0 development
- filelock ==3.13.1 development
- fluent-logger ==0.10.0 development
- fonttools ==4.46.0 development
- frozenlist ==1.4.1 development
- galaxy-release-util ==0.1.5 development
- greenlet ==3.0.1 development
- h11 ==0.14.0 development
- httpcore ==1.0.2 development
- httpx ==0.25.2 development
- idna ==3.6 development
- imagesize ==1.4.1 development
- importlib-metadata ==7.0.0 development
- importlib-resources ==6.1.1 development
- iniconfig ==2.0.0 development
- isodate ==0.6.1 development
- isort ==5.13.2 development
- jaraco-classes ==3.3.0 development
- jeepney ==0.8.0 development
- jinja2 ==3.1.2 development
- junit-xml ==1.9 development
- keyring ==24.3.0 development
- kiwisolver ==1.4.5 development
- kombu ==5.3.4 development
- lxml ==4.9.3 development
- markdown-it-py ==3.0.0 development
- markdown-it-reporter ==0.0.2 development
- markupsafe ==2.1.3 development
- matplotlib ==3.7.4 development
- matplotlib ==3.8.2 development
- mdit-py-plugins ==0.4.0 development
- mdurl ==0.1.2 development
- mirakuru ==2.5.2 development
- mistune ==2.0.5 development
- more-itertools ==10.1.0 development
- msgpack ==1.0.7 development
- multidict ==6.0.4 development
- mypy-extensions ==1.0.0 development
- myst-parser ==2.0.0 development
- nh3 ==0.2.15 development
- numpy ==1.24.4 development
- numpy ==1.26.2 development
- outcome ==1.3.0.post0 development
- packaging ==23.2 development
- pathspec ==0.12.1 development
- pillow ==10.1.0 development
- pkce ==1.0.3 development
- pkginfo ==1.9.6 development
- platformdirs ==4.1.0 development
- playwright ==1.40.0 development
- pluggy ==1.3.0 development
- port-for ==0.7.2 development
- prettytable ==3.9.0 development
- prompt-toolkit ==3.0.43 development
- psutil ==5.9.6 development
- psycopg ==3.1.15 development
- pycparser ==2.21 development
- pyee ==11.0.1 development
- pygithub ==2.1.1 development
- pygments ==2.17.2 development
- pyjwt ==2.8.0 development
- pynacl ==1.5.0 development
- pyparsing ==3.1.1 development
- pyproject-hooks ==1.0.0 development
- pysocks ==1.7.1 development
- pytest ==7.4.3 development
- pytest-asyncio ==0.23.2 development
- pytest-base-url ==2.0.0 development
- pytest-celery ==0.0.0 development
- pytest-cov ==4.1.0 development
- pytest-html ==4.1.1 development
- pytest-httpserver ==1.0.8 development
- pytest-json-report ==1.5.0 development
- pytest-metadata ==3.0.0 development
- pytest-mock ==3.12.0 development
- pytest-playwright ==0.4.3 development
- pytest-postgresql ==5.0.0 development
- pytest-shard ==0.1.2 development
- python-dateutil ==2.8.2 development
- python-irodsclient ==1.1.9 development
- python-slugify ==8.0.1 development
- pytz ==2023.3.post1 development
- pywin32-ctypes ==0.2.2 development
- pyyaml ==6.0.1 development
- rdflib ==6.3.2 development
- readme-renderer ==42.0 development
- requests ==2.31.0 development
- requests-toolbelt ==1.0.0 development
- responses ==0.24.1 development
- rfc3986 ==2.0.0 development
- rich ==13.7.0 development
- ruamel-yaml ==0.18.5 development
- ruamel-yaml-clib ==0.2.8 development
- schema-salad ==8.5.20231201181309 development
- scipy ==1.10.1 development
- scipy ==1.11.4 development
- secretstorage ==3.3.3 development
- selenium ==4.16.0 development
- seletools ==1.4.0 development
- setuptools ==69.0.2 development
- six ==1.16.0 development
- sniffio ==1.3.0 development
- snowballstemmer ==2.2.0 development
- sortedcontainers ==2.4.0 development
- sphinx ==7.1.2 development
- sphinx-rtd-theme ==1.3.0 development
- sphinxcontrib-applehelp ==1.0.4 development
- sphinxcontrib-devhelp ==1.0.2 development
- sphinxcontrib-htmlhelp ==2.0.1 development
- sphinxcontrib-jquery ==4.1 development
- sphinxcontrib-jsmath ==1.0.1 development
- sphinxcontrib-qthelp ==1.0.3 development
- sphinxcontrib-serializinghtml ==1.1.5 development
- statsd ==4.0.1 development
- testfixtures ==7.2.2 development
- text-unidecode ==1.3 development
- tinydb ==4.8.0 development
- toml ==0.10.2 development
- tomli ==2.0.1 development
- trio ==0.23.2 development
- trio-websocket ==0.11.1 development
- tuspy ==1.0.3 development
- twill ==3.2.1 development
- twine ==4.0.2 development
- typing-extensions ==4.9.0 development
- tzdata ==2023.3 development
- urllib3 ==1.26.18 development
- vine ==5.1.0 development
- watchdog ==3.0.0 development
- wcwidth ==0.2.12 development
- werkzeug ==3.0.1 development
- wrapt ==1.16.0 development
- wsproto ==1.2.0 development
- yarl ==1.9.4 development
- zipp ==3.17.0 development
- pytest * test
- pytest * test
- pytest * test
- pytest * test
- pytest * test
- pytest * test
- attrs ==23.1.0
- flake8 ==6.1.0
- flake8-bugbear ==23.12.2
- mccabe ==0.7.0
- pycodestyle ==2.11.1
- pyflakes ==3.1.0
- ruff ==0.1.8
- a2wsgi ==1.9.0
- adal ==1.2.7
- aiobotocore ==2.9.0
- aiodataloader ==0.4.0
- aiofiles ==23.2.1
- aiohttp ==3.9.1
- aioitertools ==0.11.0
- aiosignal ==1.3.1
- alembic ==1.13.0
- amqp ==5.2.0
- aniso8601 ==9.0.1
- anyio ==4.1.0
- apispec ==6.3.0
- appdirs ==1.4.4
- arcp ==0.2.1
- argcomplete ==3.2.1
- async-timeout ==4.0.3
- attmap ==0.13.2
- attrs ==23.1.0
- babel ==2.14.0
- backports-zoneinfo ==0.2.1
- bagit ==1.8.1
- bagit-profile ==1.3.1
- bcrypt ==4.1.2
- bdbag ==1.7.1
- beaker ==1.12.1
- billiard ==4.2.0
- bioblend ==1.2.0
- bleach ==6.1.0
- boltons ==23.1.1
- boto ==2.49.0
- botocore ==1.33.13
- bx-python ==0.10.0
- cachecontrol ==0.13.1
- celery ==5.3.6
- certifi ==2023.11.17
- cffi ==1.16.0
- charset-normalizer ==3.3.2
- cheetah3 ==3.2.6.post1
- circus ==0.18.0
- click ==8.1.7
- click-didyoumean ==0.3.0
- click-plugins ==1.1.1
- click-repl ==0.3.0
- cloudauthz ==0.6.0
- cloudbridge ==3.2.0
- colorama ==0.4.6
- coloredlogs ==15.0.1
- conda-package-streaming ==0.9.0
- cryptography ==41.0.7
- cwl-upgrader ==1.2.11
- cwl-utils ==0.32
- cwltool ==3.1.20231207110929
- decorator ==5.1.1
- defusedxml ==0.7.1
- deprecation ==2.1.0
- dictobj ==0.4
- dnspython ==2.4.2
- docopt ==0.6.2
- docutils ==0.18.1
- dparse ==0.6.3
- ecdsa ==0.18.0
- edam-ontology ==1.25.2
- email-validator ==2.1.0.post1
- exceptiongroup ==1.2.0
- fastapi ==0.98.0
- fastapi-utils ==0.2.1
- filelock ==3.13.1
- frozenlist ==1.4.1
- fs ==2.4.16
- fsspec ==2023.12.2
- future ==0.18.3
- galaxy-sequence-utils ==1.1.5
- galaxy2cwl ==0.1.4
- graphene ==3.3
- graphene-sqlalchemy ==3.0.0b3
- graphql-core ==3.2.3
- graphql-relay ==3.2.0
- gravity ==1.0.4
- greenlet ==3.0.1
- gunicorn ==21.2.0
- gxformat2 ==0.18.0
- h11 ==0.14.0
- h5grove ==1.3.0
- h5py ==3.10.0
- humanfriendly ==10.0
- idna ==3.6
- importlib-metadata ==7.0.0
- importlib-resources ==6.1.1
- isa-rwval ==0.10.10
- isodate ==0.6.1
- jinja2 ==3.1.2
- jmespath ==1.0.1
- jsonref ==1.1.0
- jsonschema ==4.20.0
- jsonschema-specifications ==2023.11.2
- kombu ==5.3.4
- lagom ==2.6.0
- lxml ==4.9.3
- mako ==1.3.0
- markdown ==3.5.1
- markdown-it-py ==3.0.0
- markupsafe ==2.1.3
- mdurl ==0.1.2
- mercurial ==6.6.1
- mistune ==2.0.5
- mrcfile ==1.4.3
- msal ==1.26.0
- msgpack ==1.0.7
- multidict ==6.0.4
- mypy-extensions ==1.0.0
- networkx ==2.5
- nodeenv ==1.8.0
- numpy ==1.24.4
- numpy ==1.26.2
- oauthlib ==3.2.2
- orjson ==3.9.10
- oyaml ==1.0
- packaging ==23.2
- paramiko ==3.3.1
- parsley ==1.3
- paste ==3.7.1
- pastedeploy ==3.1.0
- pebble ==5.0.5
- pkgutil-resolve-name ==1.3.10
- promise ==2.3
- prompt-toolkit ==3.0.43
- prov ==1.5.1
- psutil ==5.9.6
- pulsar-galaxy-lib ==0.15.5
- pyasn1 ==0.5.1
- pycparser ==2.21
- pycryptodome ==3.19.0
- pydantic ==1.10.13
- pydantic-tes ==0.1.5
- pydot ==1.4.2
- pyeventsystem ==0.1.0
- pyfaidx ==0.7.2.2
- pygments ==2.17.2
- pyjwt ==2.8.0
- pykwalify ==1.8.0
- pylibmagic ==0.5.0
- pynacl ==1.5.0
- pyparsing ==3.1.1
- pyreadline3 ==3.4.1
- pysam ==0.22.0
- python-dateutil ==2.8.2
- python-jose ==3.3.0
- python-magic ==0.4.27
- python-multipart ==0.0.6
- python3-openid ==3.2.0
- pytz ==2023.3.post1
- pyyaml ==6.0.1
- pyzmq ==25.1.2
- rdflib ==6.3.2
- referencing ==0.32.0
- refgenconf ==0.12.2
- regex ==2023.10.3
- repoze-lru ==0.7
- requests ==2.31.0
- requests-oauthlib ==1.3.1
- requests-toolbelt ==1.0.0
- requests-unixsocket ==0.3.0
- rich ==13.7.0
- rocrate ==0.9.0
- routes ==2.5.1
- rpds-py ==0.13.2
- rsa ==4.9
- ruamel-yaml ==0.18.5
- ruamel-yaml-clib ==0.2.8
- s3fs ==2023.12.2
- schema-salad ==8.5.20231201181309
- setuptools ==69.0.2
- setuptools-scm ==5.0.2
- shellescape ==3.8.1
- six ==1.16.0
- sniffio ==1.3.0
- social-auth-core ==4.0.3
- sortedcontainers ==2.4.0
- spython ==0.3.13
- sqlalchemy ==1.4.50
- sqlitedict ==2.1.0
- sqlparse ==0.4.4
- starlette ==0.27.0
- starlette-context ==0.3.6
- starlette-graphene3 ==0.6.0
- supervisor ==4.2.5
- svgwrite ==1.4.3
- tenacity ==8.2.3
- tifffile ==2023.7.10
- tinydb ==4.8.0
- tomli ==2.0.1
- tornado ==6.4
- tqdm ==4.66.1
- tuspy ==1.0.3
- tuswsgi ==0.5.5
- typing-extensions ==4.9.0
- tzdata ==2023.3
- tzlocal ==5.2
- ubiquerg ==0.6.3
- urllib3 ==1.26.18
- uvicorn ==0.24.0.post1
- uvloop ==0.19.0
- vine ==5.1.0
- wcwidth ==0.2.12
- webencodings ==0.5.1
- webob ==1.8.7
- whoosh ==2.7.4
- wrapt ==1.16.0
- yacman ==0.9.2
- yarl ==1.9.4
- zipp ==3.17.0
- zipstream-new ==1.1.8
- zstandard ==0.22.0
- cffi ==1.16.0
- cryptography ==41.0.7
- mypy ==1.7.1
- mypy-extensions ==1.0.0
- pycparser ==2.21
- pydantic ==1.10.13
- tomli ==2.0.1
- types-bleach ==6.1.0.1
- types-boto ==2.49.18.9
- types-contextvars ==2.4.7.3
- types-dataclasses ==0.6.6
- types-docutils ==0.20.0.3
- types-markdown ==3.5.0.3
- types-paramiko ==3.3.0.2
- types-pkg-resources ==0.1.3
- types-python-dateutil ==2.8.19.14
- types-pyyaml ==6.0.12.12
- types-requests ==2.31.0.6
- types-six ==1.16.21.9
- types-urllib3 ==1.26.25.14
- typing-extensions ==4.9.0
- mock-ssh-server * test
- pkce * test
- pykwalify * test
- pytest * test
- testfixtures * test
- pytest * test
- pytest * test
- pytest * test
- pytest * test
- pytest * test
- pytest * test
- pytest * test
- Beaker * test
- pytest * test
- pytest-mock * test
- pytest * test
- pytest * test
- pytest-httpserver * test
- responses * test
- httpx * test
- pytest * test
- pytest-asyncio * test
- pytest * test
pyproject.toml
pypi
- Babel *
- Beaker *
- Cheetah3 !=3.2.6.post2
- Mako *
- Markdown *
- MarkupSafe *
- Mercurial *
- Parsley *
- Paste *
- PyJWT *
- PyYAML *
- Routes *
- SQLAlchemy >=1.4.25,<2
- WebOb *
- Whoosh *
- a2wsgi *
- aiofiles *
- alembic *
- apispec *
- bdbag >=1.6.3
- bioblend *
- bleach *
- boltons *
- boto *
- bx-python *
- celery *
- circus *
- cloudauthz ==0.6.0
- cloudbridge *
- conda-package-streaming *
- cwltool >=3.1.20230624081518
- dictobj *
- dnspython *
- docutils !=0.17, !=0.17.1
- dparse *
- edam-ontology *
- fastapi >=0.71.0, !=0.89.0, <0.99
- fastapi-utils *
- fs *
- future *
- galaxy_sequence_utils *
- graphene-sqlalchemy 3.0.0b3
- gravity >=1.0.4
- gunicorn *
- gxformat2 *
- h5grove >=1.2.1
- h5py *
- importlib-resources *
- isa-rwval >=0.10.10
- kombu >=5.3
- lagom *
- mrcfile *
- msal *
- nodeenv *
- numpy *
- packaging *
- paramiko !=2.9.0, !=2.9.1
- pebble *
- psutil *
- pulsar-galaxy-lib >=0.15.0.dev0
- pycryptodome *
- pydantic <2
- pykwalify *
- pylibmagic *
- pyparsing *
- pysam >=0.21
- python >=3.8,<3.12
- python-dateutil *
- python-magic *
- python-multipart *
- refgenconf >=0.12.0
- regex *
- requests *
- rocrate *
- s3fs ^2023.1.0
- schema-salad !=8.3.20220721194857
- social-auth-core ==4.0.3
- sortedcontainers *
- sqlitedict *
- sqlparse *
- starlette *
- starlette-context *
- starlette-graphene3 *
- svgwrite *
- tifffile *
- tuswsgi *
- typing-extensions *
- uvicorn *
- uvloop *
- zipstream-new *
requirements.txt
pypi
- a2wsgi ==1.9.0
- adal ==1.2.7
- aiobotocore ==2.9.0
- aiodataloader ==0.4.0
- aiofiles ==23.2.1
- aiohttp ==3.9.1
- aioitertools ==0.11.0
- aiosignal ==1.3.1
- alembic ==1.13.0
- amqp ==5.2.0
- aniso8601 ==9.0.1
- anyio ==4.1.0
- apispec ==6.3.0
- appdirs ==1.4.4
- arcp ==0.2.1
- argcomplete ==3.2.1
- async-timeout ==4.0.3
- attmap ==0.13.2
- attrs ==23.1.0
- babel ==2.14.0
- backports-zoneinfo ==0.2.1
- bagit ==1.8.1
- bagit-profile ==1.3.1
- bcrypt ==4.1.2
- bdbag ==1.7.1
- beaker ==1.12.1
- billiard ==4.2.0
- bioblend ==1.2.0
- bleach ==6.1.0
- boltons ==23.1.1
- boto ==2.49.0
- botocore ==1.33.13
- bx-python ==0.10.0
- cachecontrol ==0.13.1
- celery ==5.3.6
- certifi ==2023.11.17
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