Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: ome
dell/dellemc-openmanage-ansible-modules
Dell OpenManage Ansible Modules
Language: Python - Size: 25.2 MB - Last synced: about 15 hours ago - Pushed: about 23 hours ago - Stars: 314 - Forks: 159
ome/ome-zarr-py
Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
Language: Python - Size: 763 KB - Last synced: 13 days ago - Pushed: 13 days ago - Stars: 138 - Forks: 50
ome/omero-documentation
Sphinx-based documentation for the Open Microscopy Environment
Language: Shell - Size: 233 MB - Last synced: 13 days ago - Pushed: 13 days ago - Stars: 19 - Forks: 50
tlambert03/ome-types
native Python dataclasses for the OME data model
Language: Python - Size: 753 KB - Last synced: about 19 hours ago - Pushed: about 22 hours ago - Stars: 49 - Forks: 9
ome/www.openmicroscopy.org
OME main website
Language: HTML - Size: 29.2 MB - Last synced: 13 days ago - Pushed: 13 days ago - Stars: 5 - Forks: 22
manics/kubernetes-omero
Kubernetes Helm charts for OMERO
Language: Python - Size: 1.44 MB - Last synced: 14 days ago - Pushed: 14 days ago - Stars: 6 - Forks: 10
labsyspharm/minerva-story
Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.
Language: HTML - Size: 269 MB - Last synced: 26 days ago - Pushed: 27 days ago - Stars: 49 - Forks: 14
AirenSoft/OvenMediaEngine
OvenMediaEngine (OME) is a Sub-Second Latency Live Streaming Server with Large-Scale and High-Definition. #WebRTC #LLHLS
Language: C++ - Size: 26.9 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 2,421 - Forks: 1,044
joshmoore/status Fork of ome/status
Status dashboard for the OME project
Language: HTML - Size: 0 Bytes - Last synced: about 1 month ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0
joshmoore/deployment Fork of IDR/deployment
Deployment infrastructure for the Image Data Resource
Language: Python - Size: 2.05 MB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
BiologyTools/BioCore
Bio Library in .NET8. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.
Language: C# - Size: 107 MB - Last synced: 5 days ago - Pushed: about 1 month ago - Stars: 2 - Forks: 1
IDR/kube-helm-docker π¦
Docker image with kubectl, helm and helmfile
Language: Dockerfile - Size: 19.5 KB - Last synced: about 1 month ago - Pushed: over 5 years ago - Stars: 0 - Forks: 1
IDR/k8s-analysis-deploy π¦
Continuous deployment for the IDR Kubernetes analysis platform
Language: Shell - Size: 1.01 MB - Last synced: about 1 month ago - Pushed: over 4 years ago - Stars: 1 - Forks: 3
Euro-BioImaging/BatchConvert
A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.
Language: Python - Size: 10.7 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 13 - Forks: 2
ome/omero-server-docker
OMERO.server production docker image
Language: Shell - Size: 154 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 12 - Forks: 24
ome/omero-web-docker
OMERO.web production docker image
Language: Makefile - Size: 133 KB - Last synced: about 2 months ago - Pushed: 2 months ago - Stars: 6 - Forks: 18
ome/ansible-role-omero-web
Installs and configures OMERO.web and Nginx
Language: Python - Size: 178 KB - Last synced: about 2 months ago - Pushed: 2 months ago - Stars: 1 - Forks: 14
ome/ansible-role-anonymous-ftp
Anonymous FTP uploads with Docker
Language: Jinja - Size: 33.2 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 1 - Forks: 6
ome/ansible-role-network
Set up network interfaces with Ansible
Language: Jinja - Size: 39.1 KB - Last synced: about 2 months ago - Pushed: 4 months ago - Stars: 6 - Forks: 17
ome/ansible-role-omero-web-django-prometheus
Django Prometheus Exporter for OMERO.web
Language: Jinja - Size: 39.1 KB - Last synced: about 2 months ago - Pushed: 4 months ago - Stars: 1 - Forks: 6
ome/ansible-role-omero-common
Common variables and tasks for OME applications
Language: Python - Size: 27.3 KB - Last synced: about 2 months ago - Pushed: 3 months ago - Stars: 1 - Forks: 6
ome/ansible-role-minio-s3-gateway
Minio S3 gateway with additional restricted users
Language: Python - Size: 28.3 KB - Last synced: about 2 months ago - Pushed: 4 months ago - Stars: 2 - Forks: 6
microscopepony/omero-oauth
OMERO.web application to allow OAuth2 login to OMERO
Language: Python - Size: 183 KB - Last synced: 2 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 3
microscopepony/omero-idirector
OMERO.web app for automatically redirecting based on partial matches on OMERO object names
Language: Python - Size: 28.3 KB - Last synced: 2 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0
microscopepony/omero-shrtn
OMERO.web app for adding short URLs to OMERO.web
Language: Python - Size: 15.6 KB - Last synced: 2 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0
microscopepony/omero-server-jupyter
Jupyter Dockerfile for trying OMERO
Language: Shell - Size: 10.7 KB - Last synced: 2 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 1
microscopepony/omero-cli-externalconfig
OMERO server external configuration plugin
Language: Python - Size: 44.9 KB - Last synced: 2 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0
microscopepony/idr-count-publications
Which journals are most published in the IDR?
Language: Jupyter Notebook - Size: 10.7 KB - Last synced: 2 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0
microscopepony/omero-server-setup
Create, initialise and upgrade OMERO databases
Language: PLpgSQL - Size: 2.48 MB - Last synced: 2 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0
microscopepony/idr-release-stats
Plot IDR release stats
Language: Jupyter Notebook - Size: 140 KB - Last synced: 2 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0
microscopepony/idr0083-sars-cov2-notebook
An example of reading a 13 gigapixel SARS-CoV-2 image (around 27 GB on disk) in Jupyter using Zarr
Language: Jupyter Notebook - Size: 15.3 MB - Last synced: 2 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 1
microscopepony/idr-kubernetes
Setup a Kubernetes cluster
Language: HCL - Size: 23.4 KB - Last synced: 2 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0
openmicroscopy/openmicroscopy.github.io
Compatibility repository handling redirects from openmicroscopy.github.io to ome.github.io
Language: HTML - Size: 1.95 KB - Last synced: 2 months ago - Pushed: about 5 years ago - Stars: 1 - Forks: 0
ome/ansible-role-prometheus-postgres
Prometheus Postgres exporter
Language: Python - Size: 57.6 KB - Last synced: about 2 months ago - Pushed: 4 months ago - Stars: 25 - Forks: 26
ome/ansible-role-postgresql-backup
Backup PostgreSQL database servers
Language: Python - Size: 36.1 KB - Last synced: about 2 months ago - Pushed: 5 months ago - Stars: 5 - Forks: 10
Silver-Fang/Image5D
5DεΎεθ―»εεΊοΌε ¨η½ζ快第δΈζΉOIRθ―»ε ₯ε¨
Language: C++ - Size: 11.2 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 5 - Forks: 0
spacetx/spacetx-writer
Convert supported filesets to the SpaceTx format
Language: Java - Size: 85.9 KB - Last synced: about 1 month ago - Pushed: about 5 years ago - Stars: 3 - Forks: 1
ome/apacheds-docker Fork of FlechaRoja/ApacheDS
Dockerfile to build an ApacheDS container providing an LDAP and optionally a Kerberos service.
Language: Python - Size: 74.2 KB - Last synced: about 2 months ago - Pushed: 2 months ago - Stars: 40 - Forks: 61
labsyspharm/minerva-cloud
Minerva Cloud is a novel cloud-native (AWS) platform for high-dimensional microscopy image storage, management, and visualization.
Language: Python - Size: 337 KB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 2 - Forks: 4
vibbits/nis2pyr
Python utility and library for converting Nikon .nd2 files to pyramidal OME TIFF.
Language: Python - Size: 70.3 KB - Last synced: 19 days ago - Pushed: about 2 years ago - Stars: 7 - Forks: 1
labsyspharm/minerva-author-ui
Minerva Author is an authoring tool used to create Minerva narrated stories via selection of specific channel groupings and image views.
Language: JavaScript - Size: 3.67 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 4 - Forks: 5
ome/EMBO-Practical-Course-2023
Advanced methods in bioimage analysis
Language: Jupyter Notebook - Size: 8.88 MB - Last synced: about 2 months ago - Pushed: 9 months ago - Stars: 6 - Forks: 2
ome/ansible-role-iptables-raw
Ansible module to import iptables_raw library
Language: Python - Size: 47.9 KB - Last synced: about 2 months ago - Pushed: 5 months ago - Stars: 4 - Forks: 9
ome/vsftpd-anonymous-upload-docker
Vsftpd Docker image for anonymous FTP uploads only
Language: Shell - Size: 49.8 KB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 7 - Forks: 12
ome/ome-zarr-catalog
A template page for listing OME-NGFF images
Language: JavaScript - Size: 1.81 MB - Last synced: about 2 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 2
lawa123789/ometv-ip
Script designed to provide information about the geographical location of the person you are connected to during a video session on website ome.tv.
Language: JavaScript - Size: 0 Bytes - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 0
labsyspharm/minerva-cloud-ui
Minerva Cloud is a novel cloud-based (AWS) software for high-dimensional image management, storage and visualization.
Language: JavaScript - Size: 594 KB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 1 - Forks: 2
BiologyTools/Bio
A .NET library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.
Language: C# - Size: 28.9 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 6 - Forks: 0
ome/ansible-role-python-virtualenv-upstream π¦
Ansible role to setup a Python virtualenv using the upstream package
Language: Python - Size: 4.88 KB - Last synced: about 2 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 1
ome/ome-help π¦
OME Project User Guides
Language: HTML - Size: 502 MB - Last synced: about 2 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 17
ome/kubernetes-platform π¦
Infrastructure for managing the Kubernetes platform in the OME
Language: Shell - Size: 34.2 KB - Last synced: about 2 months ago - Pushed: over 5 years ago - Stars: 1 - Forks: 7
ome/ansible-role-omego π¦
omego, a utility for downloading and installing OME applications
Language: HTML - Size: 20.5 KB - Last synced: about 2 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 5
ome/conda-omero-py π¦
OMERO.py Conda package
Size: 49.8 KB - Last synced: about 2 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 5
pokczampDev/Ome-tv-virtual-camera-obs
Tutorial on how to turn on a virtual camera on ome tv! πΊ
Size: 4.88 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0
ome/omero-install
OMERO installation scripts
Language: Shell - Size: 1.11 MB - Last synced: about 2 months ago - Pushed: 3 months ago - Stars: 4 - Forks: 24
FabrizioMusacchio/ZARR_tests
Python code that I used in my blog posts on the Zarr file format.
Language: Python - Size: 4.98 MB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0
ome/omero-prometheus-tools
Utilities for monitoring OMERO with Prometheus
Language: Python - Size: 65.4 KB - Last synced: about 2 months ago - Pushed: about 1 year ago - Stars: 2 - Forks: 9
tlambert03/bioformats_jar
(deprecated) meta-package to import bioformats_jar from scyjava
Language: Python - Size: 39.1 MB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0
ome/omego
OME, Go! Installation and administration tool for OME applications.
Language: Python - Size: 2.64 MB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 6 - Forks: 15
ome/idr-redmine-tracker
Email tracker for IDR submissions using redmine
Language: Dockerfile - Size: 57.6 KB - Last synced: about 2 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 3
ome/ansible-role-omero-prometheus-exporter
Ansible role for OMERO Prometheus exporter
Language: Jinja - Size: 50.8 KB - Last synced: about 2 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 6
imcf/jython-ome-model
:coffee: :snake: :microscope: :bookmark: :bookmark_tabs: A mavenized package of the Open Microscopy Environment "ome-model" Python module to be used in ImageJ2.
Language: Python - Size: 5.86 KB - Last synced: 2 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0
ome/minio-helm-chart
Minio helm chart for testing performance of clients on degraded networks
Language: Smarty - Size: 133 KB - Last synced: about 2 months ago - Pushed: about 4 years ago - Stars: 2 - Forks: 5
microscopepony/idr0015-tara-oceans-geospatial
This notebook shows how to plot geospatial metadata attached to the samples gathered by the Tara Oceans project.
Language: Jupyter Notebook - Size: 17.6 KB - Last synced: 2 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0
microscopepony/jupyter-omero-authenticator
Use OMERO to authenticate with JupyterHub
Language: Python - Size: 14.6 KB - Last synced: 2 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0
manics/ansible-role-k8s-heketi-gluster
Setup a GlusterFS cluster with Heketi REST API on Kubernetes
Size: 39.1 KB - Last synced: about 2 months ago - Pushed: about 6 years ago - Stars: 5 - Forks: 2
ome/status
Status dashboard for the OME project
Language: HTML - Size: 119 KB - Last synced: about 2 months ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 3
ome/fluentd-docker
Fluentd image with additional plugins
Size: 1.95 KB - Last synced: about 2 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 3
ome/presentation-20171110-gre-symposium
Presentation given at the University of Dundee School of Life Sciences GRE Symposium 2017
Language: Jupyter Notebook - Size: 56.9 MB - Last synced: about 2 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 1
manics/k8s-external-storage-nfs-provisioner
A Helm chart for dynamic NFS persistent volumes
Language: Smarty - Size: 5.86 KB - Last synced: about 2 months ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0
manics/ansible-role-docker-registry
Setup a Docker Registry, managed with Systemd
Language: Python - Size: 2.93 KB - Last synced: about 2 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 1