Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: tissue-analysis
TissueImageAnalytics/tiatoolbox
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
Language: Python - Size: 441 MB - Last synced: 1 day ago - Pushed: 1 day ago - Stars: 331 - Forks: 71
jopo666/HistoPrep
Preprocessing module for large histological images
Language: Python - Size: 27.7 MB - Last synced: 2 months ago - Pushed: 12 months ago - Stars: 15 - Forks: 3
davidbhr/CompactionAnalyzer
Evaluates the fiber orientation and intensity around cells that compact collagen tissue as measure of contractile strength.
Language: Python - Size: 733 MB - Last synced: about 1 month ago - Pushed: 3 months ago - Stars: 7 - Forks: 1
c-arthurs/QuArray
An application for exporting and analysing tissue array whole slide image files
Language: Python - Size: 22.7 MB - Last synced: 8 months ago - Pushed: over 3 years ago - Stars: 7 - Forks: 3
tonibois/MARTA
Myocyte Automatic Retrieval and Tissue Analyzer (https://www.mdpi.com/2218-273X/10/9/1334)
Language: Python - Size: 268 MB - Last synced: 8 months ago - Pushed: over 2 years ago - Stars: 2 - Forks: 0
intsynko/TissueDefectAnalysis
Graduated Work by recogmition tissue defect. For recognition defect zones used Local Binary Pattern, for recognition border defect used Gabor's Veivlet.
Language: C# - Size: 1.94 MB - Last synced: 10 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0
ciccalab/SIMPLI
SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
Language: R - Size: 45.2 MB - Last synced: 10 months ago - Pushed: 11 months ago - Stars: 26 - Forks: 4
aravi11/EAGNN
Official PyTorch Implementation of paper 'Edge-Based Graph Neural Networks for Cell-Graph Modeling and Prediction'
Language: Python - Size: 3.56 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0
smujiang/TumorStromaReaction
Quantitatively evaluate tumor stroma reaction within ovarian cancers, and establish assocaitaions to prognosis, molecular signatures.
Language: Python - Size: 18.3 MB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0
VGeorgii/Microsa
Python library designed for tissue microenvironment spatial analysis
Language: Python - Size: 11.9 MB - Last synced: over 1 year ago - Pushed: about 2 years ago - Stars: 2 - Forks: 1
