GitHub topics: tissue-analysis
TissueImageAnalytics/tiatoolbox
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
Language: Python - Size: 505 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 425 - Forks: 89
SlavovLab/Protein-Clearance
Analysis from Leduc and Slavov (2025): Protein degradation and growth dependent dilution substantially shape mammalian proteomes
Language: R - Size: 35.2 KB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 0 - Forks: 0
skar-2274/Muscle-Contraction-Motion-Detection
A script to plot traces of muscle contractions from video recordings. This is part of my ongoing PhD work.
Language: Python - Size: 26.4 KB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 0 - Forks: 0
cjrobinson8/Complex-Wound-Analysis-using-AI
Repository for publication outlining a number of computational models for complex wound analysis in both mice and humans.
Size: 8.79 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0
tuguiMAtei/Complex-Wound-Analysis-using-AI
Repository for publication outlining a number of computational models for complex wound analysis in both mice and humans.
Size: 1.95 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0
jopo666/HistoPrep
Preprocessing module for large histological images
Language: Python - Size: 27.7 MB - Last synced at: 21 days ago - Pushed at: almost 2 years ago - Stars: 20 - Forks: 6
ShayanDodge/3D-FDTD-Plane-Wave-Vessel-Skin-MATLAB
This repository provides a MATLAB implementation of the 3D Finite Difference Time Domain (FDTD) method for simulating the propagation of plane electromagnetic waves in real skin.
Language: MATLAB - Size: 10.2 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 1 - Forks: 0
c-arthurs/QuArray
An application for exporting and analysing tissue array whole slide image files
Language: Python - Size: 22.7 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 7 - Forks: 3
tonibois/MARTA
Myocyte Automatic Retrieval and Tissue Analyzer (https://www.mdpi.com/2218-273X/10/9/1334)
Language: Python - Size: 268 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 0
ciccalab/SIMPLI
SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
Language: R - Size: 45.2 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 26 - Forks: 4
aravi11/EAGNN
Official PyTorch Implementation of paper 'Edge-Based Graph Neural Networks for Cell-Graph Modeling and Prediction'
Language: Python - Size: 3.56 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
smujiang/TumorStromaReaction
Quantitatively evaluate tumor stroma reaction within ovarian cancers, and establish assocaitaions to prognosis, molecular signatures.
Language: Python - Size: 18.3 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0
VGeorgii/Microsa
Python library designed for tissue microenvironment spatial analysis
Language: Python - Size: 11.9 MB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 1
intsynko/TissueDefectAnalysis
Graduated Work by recogmition tissue defect. For recognition defect zones used Local Binary Pattern, for recognition border defect used Gabor's Veivlet.
Language: C# - Size: 1.94 MB - Last synced at: about 2 months ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
