j-pyl/exo-2-clr

Detection and analysis pipeline of exocytosis in two-channel microscopy with FIJI and R

Language: ImageJ Macro - Size: 2.78 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 0 - Forks: 0

MontpellierRessourcesImagerie/imagej_macros_and_scripts

ImageJ macros and scripts written at the imaging facility MRI

Language: Jupyter Notebook - Size: 17.1 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 33 - Forks: 16

NathanThibieroz/Cell_Analyser_in_Batch_for_Neurites_-CABaNe-

ImageJ macro for neurite analysis in high content

Size: 9.77 KB - Last synced at: 28 days ago - Pushed at: 28 days ago - Stars: 0 - Forks: 0

gtatters/ThermImageJ

ImageJ functions and macros for working with thermal image files

Language: ImageJ Macro - Size: 18.4 MB - Last synced at: 20 days ago - Pushed at: 11 months ago - Stars: 49 - Forks: 6

SandraSSB/MACROglia_cell-morphology-analysis

ImageJ macro for morphological analysis

Language: ImageJ Macro - Size: 28.9 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0

oseynnes/SMA

SMA is an ImageJ macro to automate the analysis of muscle architecture from B-mode ultrasound images.

Language: ImageJ Macro - Size: 1.11 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 2

BiologyTools/BioImager

A .NET microscopy imaging application based on Bio library. Supports various microscopes by using imported libraries & GUI automation. Supports XInput game controllers to move stage, take images, run ImageJ macros on images or Bio C# scripts.

Language: C# - Size: 73.5 MB - Last synced at: 17 days ago - Pushed at: 3 months ago - Stars: 17 - Forks: 5

BiologyTools/BioLib

A GUI-less version of Bio .NET library for editing & annotating various microscopy image formats. Supports all bioformats supported images. Integrates with ImageJ, running ImageJ filters & macro functions.

Language: C# - Size: 65.2 MB - Last synced at: 17 days ago - Pushed at: 3 months ago - Stars: 3 - Forks: 1

aleskl/imagej

A collection of customised ImageJ macros

Language: ImageJ Macro - Size: 50.8 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

emx77/ASI_MTF

Imagej macro to calculate the MTF based on a knife edge measurement

Language: ImageJ Macro - Size: 918 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 17 - Forks: 4

gambaan/Aiptasia_receptors

Immunolocalization of oxylipin receptors proteins in a model cnidarian-dinoflagellate symbiosis

Size: 59.7 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

KeesStraatman/Image-annotation-macro

ImageJ macro for image annotations

Language: ImageJ Macro - Size: 13.7 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

KeesStraatman/Delete-ROI

ImageJ/Fiji macro to delete ROIs from image, ROI manager and Results table

Size: 3.91 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

KeesStraatman/Multi-color-line-profile-plot

ImageJ macro to plot line profiles in up to 7 colours

Size: 230 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

SoriaFN/Tools

A collection of random ImageJ macros I use at the lab

Language: ImageJ Macro - Size: 1.01 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 1 - Forks: 0

aleks-szczure/ThunderFISH

ThunderFISH: Script for sparse RNA-FISH data analysis with increased throughput with sample preparation protocol

Language: ImageJ Macro - Size: 15.7 MB - Last synced at: 10 months ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

IMBalENce/EM-tool

an ImageJ toolset for EM image analysis

Language: ImageJ Macro - Size: 43 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 6 - Forks: 2

Sooperfish/Fiji-glTFsplitter Fork of lfang-salk/Batch-processing-toolkit

ImageJ/Fiji macro for bulk splitting glTF metallicRoughness.pngs back into their respective metallic, roughness and AO maps

Language: ImageJ Macro - Size: 23.4 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

pmascalchi/ImageJ_AutoClickerJ

A plugin to combine power of mouse and keyboard control with image processing and analysis tools in ImageJ

Size: 51.8 KB - Last synced at: 9 months ago - Pushed at: over 7 years ago - Stars: 7 - Forks: 0

imcf/noisee

:microscope: NoiSee: An easy-to-use ImageJ macro for measuring SNR (signal-to-noise ratio) of light microscopes.

Language: Python - Size: 163 KB - Last synced at: about 2 months ago - Pushed at: over 6 years ago - Stars: 2 - Forks: 1

lastjunglist/ImageJ_Dummy_scripts

My awkward scripts for making image processing easier.

Language: ImageJ Macro - Size: 12.7 KB - Last synced at: 10 days ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0

MoritzNelle/HSI-analysis

Language: ImageJ Macro - Size: 6.84 KB - Last synced at: about 1 month ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

pmascalchi/ImageJ_miscellaneous

Various tools for ImageJ / Fiji

Language: ImageJ Macro - Size: 3.27 MB - Last synced at: 9 months ago - Pushed at: over 3 years ago - Stars: 4 - Forks: 1

pmascalchi/ImageJ_Export-LIF-as-Individual-Images

ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)

Language: ImageJ Macro - Size: 37.1 KB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 6 - Forks: 4

amironov21/ImageJ_stereology

Stereological macros for ImageJ

Language: ImageJ Macro - Size: 64.5 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

joek47/imagej

Mask Annotation Macros for Imagej

Size: 3.91 KB - Last synced at: over 1 year ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 0

atakehiro/TurboReg_macro

macro code for advanced usage of TurboReg (ImageJ plugin)

Size: 1.26 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

hornbya/Ash-surface-salts

Segmentation and analysis of salts on glasses

Size: 40 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

helioalexandre/Macros_Plugins

Language: Java - Size: 357 KB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0

seanpm2001/AI2001_Category-Source_Code-SC-ImageJ-Macro

🧠️🖥️2️⃣️0️⃣️0️⃣️1️⃣️💾️📜️ The sourceCode:ImageJ-Macro category for AI2001, containing ImageJ-Macro programming language datasets

Language: R - Size: 2.46 MB - Last synced at: 8 days ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 1

ilyacarey/nuclei

ImageJ scripts for: (a) batch opening confocal files with two channels and merging them and (b) for a batch of confocal images with two channels, identifying nuclei as ROIs using one channel and quantifying the mean pixel intensity of each ROI using the other channel, and outputting results in Excel. Requirements and assumptions are in comments.

Language: ImageJ Macro - Size: 103 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

SoriaFN/Lysosome_analysis

ImageJ macros used in our 2021 paper on lysosomal restoration in parkinsonian mice

Language: ImageJ Macro - Size: 59.6 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

g7uvw/ImageJ_Macros

A collection of ImageJ Macros to process data for some very specific applications. Probably of no use to anyone by me.

Language: ImageJ Macro - Size: 2.93 KB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

Peter-T-Ruehr/checkpoint_converter

Converts any image stack to a Stratovan Checkpoint file (*.ckpt) keeping specimen names and voxel sizes.

Language: ImageJ Macro - Size: 28.3 KB - Last synced at: about 2 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 1

GReD-Clermont/omero_macro-extensions

Language: Java - Size: 179 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 6 - Forks: 5

hansenjn/ColorStackByTimeAndProject

ImageJ macros to color stacks by time point and create a video where the projection builds up frame by frame.

Language: ImageJ Macro - Size: 20.5 KB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 1

eleni-chr/NMJ-MN-image-analysis-toolkit

Morphometric analysis of neuromuscular junction microscopy images, and protein distribution and localisation analysis of immunohistochemically-labelled microscopy images.

Language: MATLAB - Size: 177 KB - Last synced at: 11 months ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

PaDroste/HeartJ

Package of ImageJ macros for quantification of cardiac histology.

Language: ImageJ Macro - Size: 4.47 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

harrylipscomb/CT-ML-MPhys

Series of code files related to surface roughness chracterisation using surface generation on ImageJ, CT scans and machine learning.

Language: Python - Size: 9.77 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 0

boonepeter/snyder-imagej

A repository containing ImageJ macros for the Snyder Lab

Language: Python - Size: 43.9 KB - Last synced at: 9 months ago - Pushed at: almost 6 years ago - Stars: 2 - Forks: 1

KierranFalloon/SMLM-Scripts

Single-Molecule Localization Microscopy scripts used in my report "Computational Methods in Single-Molecule Localization Microscopy"

Language: Python - Size: 19.5 KB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

UU-cellbiology/rods-detection-in-noisy-images

Detection of straight line segments (rods) in noisy images

Language: MATLAB - Size: 3.97 MB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 3 - Forks: 3

UU-cellbiology/radialitymap

Splitting image to radial and non-radial components ImageJ macro

Language: ImageJ Macro - Size: 16.6 KB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 5 - Forks: 2

joda01/imagej_ev_colocalization 📦

Calculates the colocalization of EVs.

Size: 4.95 MB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

Turku-BioImaging/filopodia-counter

Fiji script for automated filopodia counting from single cell images.

Language: ImageJ Macro - Size: 3.33 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

monolyt/SliceNicer

ImageJ macro for normalization of time lapse images against a reference image

Language: ImageJ Macro - Size: 134 KB - Last synced at: 5 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

yakavetsiv/distribution-macro

Macros for ImageJ/FIJI

Language: ImageJ Macro - Size: 13.7 KB - Last synced at: 9 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

seanpm2001/SNU_2D_ProgrammingTools_IDE_ImageJ

The ImageJ Programming language IDE submodule for SNU Programming Tools (2D Mode) View the main project [here](https://github.com/SNU-Programming-Tools/)

Language: ImageJ Macro - Size: 1.27 MB - Last synced at: 8 days ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 2

FattaccioliLab/2022-PhenotypingBCellsWithLipidDroplets

Language: R - Size: 1.21 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

kaitsull/mFISHoverlay

Java-based ImageJ plugin for the creation of pseudocoloured mFISH overlays. Part of the Happy Hippocampus HiPlex Menu for ImageJ by Kaitlin Sullivan.

Size: 0 Bytes - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

fraca98/ImageJ-Liver-Stereology

Semi-Automatic Liver Cysts Stereology for the quantification of the volume

Size: 2.4 MB - Last synced at: 9 months ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

bruvellu/imagej-macros

Collection of macros for image processing in Fiji/ImageJ

Language: ImageJ Macro - Size: 40 KB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

bonej-org/bonej-scripts

Helper scripts and macros using BoneJ

Language: ImageJ Macro - Size: 23.4 KB - Last synced at: 11 months ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 1

MontpellierRessourcesImagerie/ij-macro-programming-workshop

The MRI workshop about ImageJ macro programming.

Language: TeX - Size: 63.4 MB - Last synced at: 6 months ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 1

mauroccm/imgAnalysis

Scripts in IJ macro langue for image analysis

Language: ImageJ Macro - Size: 3.19 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 0

SoriaFN/Microglia_tools

ImageJ macros to analyse microglial cells in live or fixed tissue (Work-in-progress)

Language: ImageJ Macro - Size: 63.5 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 1

AlexisHaas/FIJI-ImageJ-macros

Just a few macros I wrote to help me in the analysis of my microscopy images. They were written for personal purposes, so they might be useful to others with some adaptation.

Language: ImageJ Macro - Size: 17.6 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

a-r-n-o-l-d/iWatershedSeg

An ImageJ toolset for semi-automatic and interactive segmentation.

Language: ImageJ Macro - Size: 4.21 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

KeesStraatman/WGA-analysis

ImageJ macros to identify cell area in WGA stained and other cell membrane stained cells

Size: 337 KB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

not-a-feature/MultiImageCellCounter

A simple ImageJ Macro to count the cells of multiple images.

Language: ImageJ Macro - Size: 18.6 KB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 1

quantixed/TheDigitalCell

Code associated with The Digital Cell

Language: R - Size: 39.1 KB - Last synced at: about 2 months ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 3

LauLauThom/ObjectDetectionExamples-ImageJ.JS

Example of ImageJ macros for object-localization

Size: 2.93 KB - Last synced at: about 2 months ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

MontpellierRessourcesImagerie/mripy

MRI ImageJ related python (jython) module.

Language: Python - Size: 721 KB - Last synced at: 6 months ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0

sufyanshk/imagej

ImageJ macros and plugins.

Language: Rich Text Format - Size: 9.77 KB - Last synced at: 9 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 1

Colorado-State-University-Stasevich-Lab/flexie-image-post-processing-macros

This repository is to share ImageJ/FIJI codes for post-processing images from FLEXIE microscope

Size: 6.84 KB - Last synced at: 3 months ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0

Dongboli/Ecology

Macro code for counting individuals with many files

Size: 2.93 KB - Last synced at: about 2 months ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0

dcluet/PLA

Automated detection and measurement of Proximity Ligation Assay foci in human cells nuclei.

Language: Java - Size: 79.1 KB - Last synced at: almost 2 years ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 1

axruff/ImageJ-Macros

ImageJ Macros for simple batch processing

Size: 5.86 KB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

m-entrup/IJ-Scripte

Scripts for ImageJ (Fiji) using different languages.

Language: Python - Size: 753 KB - Last synced at: 9 months ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 0

lfang-salk/Batch-processing-toolkit

Size: 13.7 KB - Last synced at: about 2 years ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 0

pmascalchi/ImageJ_SingleMoleculeSimulatedImage

A short macro to generate an image with randomly positioned "fluorescent" single molecules

Size: 62.5 KB - Last synced at: 9 months ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

AbstractGeek/my-imagej-toolbox

[ImageJ] A repository for useful custom imagej macros.

Language: Python - Size: 2.93 KB - Last synced at: 11 months ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 0