csoeller/PYME-extra

extensions and plugin additions for python-microscopy (PYME)

Language: Python - Size: 1.21 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 0 - Forks: 0

jungmannlab/picasso

A collection of tools for painting super-resolution images

Language: Python - Size: 27.3 MB - Last synced at: 16 days ago - Pushed at: 3 months ago - Stars: 120 - Forks: 54

CURTLab/IJLookUpSTORM

ImageJ 1.x implementation of a 3D real-time single molecule localization microscopy algorithm based on lookup tables

Language: C - Size: 504 KB - Last synced at: 13 days ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 0

goldyfruit/ansible-collection-smlm Fork of stdevel/ansible-collection-uyuni

Ansible Collection SUSE Multi-Linux Manager (formerly SUSE Manager/SUMA)

Size: 125 KB - Last synced at: 1 day ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

TuragaLab/DECODE

This is the official implementation of our publication "Deep learning enables fast and dense single-molecule localization with high accuracy" (Nature Methods)

Language: Python - Size: 46.2 MB - Last synced at: 3 months ago - Pushed at: almost 2 years ago - Stars: 99 - Forks: 26

DominiqueBourgeois/SMIS

Single Molecule Imaging Simulator with Advanced Fluorophore Photophysics

Language: MATLAB - Size: 293 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 5 - Forks: 1

SRMLabHUST/LuckyProfiler

An ImageJ plugin that uses the Projected-line FWHM resolution method to determine the image resolution of a final image.

Language: Java - Size: 11.3 MB - Last synced at: 9 months ago - Pushed at: over 2 years ago - Stars: 5 - Forks: 2

HMels/Channel-Registration-SMLM

Uses Catmull Rom Splines optimisation to align multiple channels in Single Molecule Localization Microscopy (or Super Resolution Microscopy). Done as part of the Thesis of Mels Habold at the Quantative Nanoscopy group of Delft University of Technology in 2022.

Language: Python - Size: 28.2 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

andrew-buist/smlmkalman

An R Package for the functions generate_filaments() and crescent_kf(), for use in SMLM (DNA-PAINT) image segmentation of filamentous structures, such as microtubules.

Language: R - Size: 4.28 MB - Last synced at: about 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

sfu-mial/smlmvis

Superresolution visualization of 3D protein localization data from a range of microscopes . Mirror of https://github.com/bencardoen/smlmvis

Language: Jupyter Notebook - Size: 12.7 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

ezrabru/POLCAM-SR

Software to process single-molecule and diffraction-limited polarisation camera image data.

Language: MATLAB - Size: 198 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

KierranFalloon/SMLM-Scripts

Single-Molecule Localization Microscopy scripts used in my report "Computational Methods in Single-Molecule Localization Microscopy"

Language: Python - Size: 19.5 KB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

Haydnspass/decode

This is the original repo of the DECODE implementation (mirrored by github.com/TuragaLab/DECODE).

Language: Python - Size: 17.4 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 1

bencardoen/smlmvis

Superresolution visualization of 3D protein localization data from a range of microscopes

Language: Jupyter Notebook - Size: 12.8 MB - Last synced at: 27 days ago - Pushed at: almost 2 years ago - Stars: 5 - Forks: 0

imrahilias/biophysics

All this is part of my Projektarbeit (student project) @ TU Wien 2021

Language: Jupyter Notebook - Size: 149 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

bencardoen/ERGO.jl

Object / density detection in astigmatic superresolution dSTORM microscopy

Language: Jupyter Notebook - Size: 17.3 MB - Last synced at: 28 days ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

CURTLab/2CALM

CALM (2-sample Comparative Analysis of 3D Localisation Microscopy data) is an analysis pipeline, which organizes localisation microscopy data into clusters of different dimensions and calculated the samples’ statistical parameters using various numerical methods.

Language: MATLAB - Size: 155 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

Jan-NM/LAND

Localization Analyzer for Nanoscale Distributions (LAND) - 2D and 3D Analysis of SMLM Data

Language: MATLAB - Size: 4.41 MB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 2 - Forks: 1

hrheydarian/3D_SMLM_visualization

Language: Matlab - Size: 5.97 MB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 4 - Forks: 1