GitHub topics: microscopy-image-analysis
ruijunfeng/A-knowledge-integrated-deep-learning-framework-for-cellular-image-analysis-in-parasite-microbiology
This repository is the summation of the previous works of our group in microscopy image analysis.
Language: Python - Size: 618 KB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 2 - Forks: 0
WayScience/coSMicQC
Single cell Morphology Quality Control (coSMicQC)
Language: Python - Size: 194 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 8 - Forks: 3
rraadd88/htsimaging
🔬Python package for high-throughput single-cell imaging analysis.
Language: Python - Size: 28.2 MB - Last synced at: 17 days ago - Pushed at: over 1 year ago - Stars: 7 - Forks: 1
juulin/Cell_segmentation_python Fork of JuliandeSwart/Cell_segmentation_python
Python script to automate multi-cell intensity data extraction from fluorescence microscopy images
Size: 7.81 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0
psu-rdmap/unet-compare
Computer vision tool using Tensorflow and Keras to train U-Net and U-Net++ with the optional use of EfficientNetB7 as a pretrained backbone for binary segmentation of microscopy images
Language: Jupyter Notebook - Size: 14.9 MB - Last synced at: 11 days ago - Pushed at: 12 days ago - Stars: 1 - Forks: 0
sanderslab/magellanmapper
MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification
Language: Python - Size: 8.5 MB - Last synced at: 13 days ago - Pushed at: 25 days ago - Stars: 21 - Forks: 4
valtot/CounTastic
MATLAB-based software for cell counting
Language: MATLAB - Size: 50.8 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
SierraD/Multi-Orientation-Maxwell
Multi-Orientation MAXWELL: A novel approach to three-dimensional super resolution mapping of X-ray excited, visible light emitting fluorophores using the X-ray Light Sheet Microscopy technique MAXWELL.
Language: Python - Size: 7.79 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0
pcarravilla/fluiditycalculator
Fluidity Calculator – ImageJ/Fiji tool to calculate membrane fluidity from spectral imaging data.
Language: ImageJ Macro - Size: 79.4 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 2 - Forks: 0
fogg-lab/tissue-model-analysis-tools
An application for automated high-throughput analysis of cancer and endothelial cell dynamics in hydrogels.
Language: Python - Size: 779 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0
Mdanishnadeem/LLSM-CME-ANALYSIS
Pipeline to assist in understanding sub-cellular events in large 4-D, 3-channel lattice light sheet
Language: Jupyter Notebook - Size: 145 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 1
elisefeld/lipidcountr
count lipid droplets in tetrahymena with Python
Language: Python - Size: 31.3 KB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
KierranFalloon/SMLM-Scripts
Single-Molecule Localization Microscopy scripts used in my report "Computational Methods in Single-Molecule Localization Microscopy"
Language: Python - Size: 19.5 KB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
