GitHub topics: integrative-analysis
samhinshaw/metabridge_shiny
🕸 Network-based multi-omic integration of metabolomics data.
Language: R - Size: 79 MB - Last synced at: 2 days ago - Pushed at: about 1 month ago - Stars: 10 - Forks: 4
BioinformaticsFMRP/TCGAbiolinks
TCGAbiolinks
Language: R - Size: 349 MB - Last synced at: 10 days ago - Pushed at: 3 months ago - Stars: 331 - Forks: 121
bowornpol/NUIM-pipeline
Network-based utility for integrating microbiome and metabolome data.
Language: R - Size: 7.01 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
xqwen/fastenloc
Colocalization analysis of genetic association signals
Language: C++ - Size: 154 MB - Last synced at: about 1 month ago - Pushed at: 3 months ago - Stars: 52 - Forks: 12
Preetam2303/multi-omics-diablo-pipeline
Code for integrating transcriptomics, methylation, and proteomics data using DIABLO
Language: R - Size: 22.5 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
hancockinformatics/MetaBridgeShiny
Repository for the MetaBridge Shiny app.
Language: R - Size: 115 MB - Last synced at: 23 days ago - Pushed at: 23 days ago - Stars: 2 - Forks: 0
KChen-lab/bindSC
Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and CyTOF data
Language: R - Size: 48.1 MB - Last synced at: 3 months ago - Pushed at: about 2 years ago - Stars: 35 - Forks: 7
sggao/sparse-gca
MATLAB and R Code for sparse GCA
Language: MATLAB - Size: 54.7 KB - Last synced at: about 15 hours ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 1
Bohdan-Khomtchouk/Biochat
Natural language processing of Gene Expression Omnibus data
Language: Common Lisp - Size: 113 MB - Last synced at: 7 months ago - Pushed at: over 6 years ago - Stars: 53 - Forks: 11
shu-hai/D-CCA
A Decomposition-based Canonical Correlation Analysis for High-dimensional Datasets (JASA-20 paper)
Language: Python - Size: 3.71 MB - Last synced at: 5 months ago - Pushed at: about 3 years ago - Stars: 11 - Forks: 10
inukj/MONTI
MONTI is a tool for analyzing large multi-omics cancer cohort data in association with clinical featuers
Language: Jupyter Notebook - Size: 164 MB - Last synced at: about 2 months ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 7
AberystwythSystemsBiology/pyMEAN
A Python package for metabolite enrichment analysis.
Language: Python - Size: 114 KB - Last synced at: 8 days ago - Pushed at: over 3 years ago - Stars: 8 - Forks: 2
alexwky/missLASSO
Penalized regression for multiple types of many features with missing data using expectation-maximization (EM) algorithm.
Size: 5.96 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
jokergoo/epik
Integrative analysis for epigenomic sequencing data
Language: HTML - Size: 16.2 MB - Last synced at: 6 months ago - Pushed at: almost 6 years ago - Stars: 1 - Forks: 2
sqjin/scAI
An unsupervised approach for the integrative analysis of single-cell multi-omics data
Language: R - Size: 100 MB - Last synced at: almost 2 years ago - Pushed at: almost 5 years ago - Stars: 20 - Forks: 8
corbinq/GAMBIT
Tool for integrative gene-based association analysis using GWAS summary stats
Language: C++ - Size: 4.55 MB - Last synced at: over 2 years ago - Pushed at: about 6 years ago - Stars: 8 - Forks: 5
ParkerLab/2021_islet-rfx6
Code for Walker, Saunders, Rai et al., (2021).
Language: Roff - Size: 13.4 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0
