GitHub topics: genetic-analysis
DZeevi-Lab/TinkerHap
Read-Based Phasing Algorithm with Integrated Multi-Method Support for Enhanced Accuracy
Language: Python - Size: 28.3 KB - Last synced at: 19 minutes ago - Pushed at: about 2 months ago - Stars: 4 - Forks: 0
infinity-a11y/PhyloTrace
PhyloTrace is a GUI platform for bacterial monitoring offering a toolkit of analyses like hashed cgMLST typing and Antimicrobial Resistance Screening.
Language: R - Size: 33.5 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 6 - Forks: 0
RoryQo/Mice-Types-Tumorgenesis-Propensity
Using Bayesian Analysis (Monte Carlo simulation & poisson sampling) to understand the difference between tumor genesis in types of mice from lab data
Language: R - Size: 421 KB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 6 - Forks: 0
TeddYenn/ShiNyP
An Interactive Shiny-Based Platform for Genome-Wide SNP Analysis and Visualization
Language: R - Size: 22.6 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 5 - Forks: 0
aliciagilmatute/Algoritmo-Genetico
Algoritmo Genético que pretende resolver el problema del viajero (TSP) desde dos lógicas diferentes.
Language: Jupyter Notebook - Size: 307 KB - Last synced at: 12 days ago - Pushed at: 13 days ago - Stars: 0 - Forks: 0
rfc391/GenDan
GenDan revolutionizes precision medicine by integrating genetic data with advanced analytics to identify and manage genetic disorders. This Python-based application combines innovation with healthcare expertise, driving advancements in genetic analysis and personalized treatment strategies.
Language: Python - Size: 106 KB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 0 - Forks: 0
opencog/agi-bio
Genomic and Proteomic data exploration and pattern mining
Language: Scheme - Size: 150 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 24 - Forks: 32
grunwaldlab/poppr
🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
Language: R - Size: 157 MB - Last synced at: 19 days ago - Pushed at: 11 months ago - Stars: 70 - Forks: 27
gilles-mastropasqua/predict-eyes-color
Predict Eyes is an interactive online tool that uses principles of genetics to estimate the probability that a child will have brow, hazel, green, gray, amber or blue eyes.
Size: 259 KB - Last synced at: 28 days ago - Pushed at: 28 days ago - Stars: 1 - Forks: 0
zkamvar/dissertation
Zhian Kamvar's Ph. D. dissertation from Oregon State University
Language: TeX - Size: 129 MB - Last synced at: 3 days ago - Pushed at: over 8 years ago - Stars: 1 - Forks: 2
matthijsz/pysumstats
Python package for reading, combining, meta-analyzing, and saving GWAS summary statistics data.
Language: Python - Size: 436 KB - Last synced at: 11 days ago - Pushed at: over 4 years ago - Stars: 3 - Forks: 0
ahmedfgad/GARI
GARI (Genetic Algorithm for Reproducing Images) reproduces a single image using Genetic Algorithm (GA) by evolving pixel values.
Language: Python - Size: 47.9 KB - Last synced at: 8 days ago - Pushed at: about 2 years ago - Stars: 59 - Forks: 32
Gabriele-Conti/KEGGSearch
Comprehensive KEGG Data Retrieval Using Multiple Sources
Language: R - Size: 40 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
wilsonfrantine/ggrelated
Plot genetic relatedness estimators using R and ggplot2
Language: R - Size: 10.7 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0
BaseMax/N-QueenGenetic
Solving N-Queen problem using Genetic Algorithm.
Language: C++ - Size: 562 KB - Last synced at: 6 days ago - Pushed at: almost 5 years ago - Stars: 3 - Forks: 0
nivasharmaa/GeneTrack
A Java program for analyzing DNA sequences and identifying individuals based on Short Tandem Repeats (STRs). Features profile database creation, STR analysis, individual identification, and relationship detection.
Language: Java - Size: 7.81 KB - Last synced at: about 1 month ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0
gitikabhardwaj/Genomic-Data-Exploration-Visualizing-Genetic-Variants-and-Allelic-Imbalance
Advanced bioinformatics analysis of RNA sequencing data and genomic databases using R. Explore allelic imbalances, SNP variants, and phylogenetic trees to uncover genetic insights and visualize complex data interactions.
Language: R - Size: 80.1 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
kenhanscombe/plink-custom-r
Setup and starter script for the PLINK R plugin.
Language: R - Size: 238 KB - Last synced at: 20 days ago - Pushed at: over 7 years ago - Stars: 7 - Forks: 0
niaid/Principles-of-Sequence-Analysis-and-Phylogenetics
Materials for the ACE - Uganda course "Principles of Sequence Analysis and Phylogenetics" given in Spring 2020.
Size: 8.22 MB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 5
humanlongevity/tredparse
TREDPARSE: HLI Short Tandem Repeat (STR) caller
Language: Python - Size: 4.84 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 22 - Forks: 7
diptavo/MultiSKAT
MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/functions (including an example dataset) to carry out the MultiSKAT tests.
Language: R - Size: 806 KB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 11 - Forks: 1
alram6701/23-and-me-Raw-data-Analysis
Genetic Insights from 23andMe Data Analysis: This repository contains Python code that processes 23andMe raw genomic data, performs SNP matching, and explores genetic traits. Genetic traits like eye color, height, intelligence, and disease risks are determined from matched SNPs.
Size: 7.81 KB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
molepi-precmed/trans-qtls
Pipeline to compute associations between genome-wide trans QTL scores and phenotype of interest
Language: R - Size: 4.12 MB - Last synced at: 6 months ago - Pushed at: almost 2 years ago - Stars: 3 - Forks: 4
gofflab/scProject
Transfer Learning of Gene Expression Signatures in Python.
Language: Jupyter Notebook - Size: 372 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 6 - Forks: 1
alexnaughtonjr/Oden_Biohacking
At The ODIN, we believe the future is going to be dominated by genetic engineering and consumer genetic design will be a big part of that. We are making that happen by creating kits and tools that allow anyone to make unique and usable organisms at home or in a lab or anywhere.
Size: 1.95 KB - Last synced at: 6 days ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 0
niaid/geneioustraining
Introductory notes on using Geneious (Biomatters) at NIAID
Size: 345 KB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 2 - Forks: 2
kentavv/mapmaker
MapMaker/Exp 3.0b and MapMaker/QTL 1.1, updated to add various improvements including multithreading
Language: C - Size: 1.44 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 1
corbinq/GAMBIT
Tool for integrative gene-based association analysis using GWAS summary stats
Language: C++ - Size: 4.55 MB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 8 - Forks: 5
ri-heme/02456
Visualizing genetic ancestry with variational autoencoders
Language: HTML - Size: 156 MB - Last synced at: 9 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
Sumidu/gghilbertstrings
Create Hilbert curves in ggplot2
Language: R - Size: 12.5 MB - Last synced at: 10 days ago - Pushed at: about 4 years ago - Stars: 16 - Forks: 1
NavpreetDevpuri/DNAc
DNAc is a programming language for DNAs.
Size: 37.1 KB - Last synced at: 6 months ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0
barrettotte/Population-Genetics-Sim
Simulate basic population genetics on fake creatures' DNA. Concepts of mutation, crossover, fitness distribution covered. Prototype algorithm for ProcJam 2018
Language: Python - Size: 94.7 KB - Last synced at: 24 days ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0
keslingmj/RNASeq
Analyses of RNA-Seq Data
Language: CSS - Size: 44.3 MB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0
jordanlab/GADGET_compute
Source code for the GADGET compute module: https://gadget.biosci.gatech.edu/compute/
Language: CSS - Size: 229 KB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0
Xemrox/GA-WS15-16
Genetic Algorithms WS15/16 hda
Language: C# - Size: 138 KB - Last synced at: about 2 years ago - Pushed at: over 8 years ago - Stars: 0 - Forks: 0
