Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: genetic-variants
StatBiomed/SNPmanifold
Manifold learning for single-cell single-nucleotide genetic variations
Language: Jupyter Notebook - Size: 264 MB - Last synced: about 21 hours ago - Pushed: 1 day ago - Stars: 1 - Forks: 0
gitikabhardwaj/Genomic-Data-Exploration-Visualizing-Genetic-Variants-and-Allelic-Imbalance
Advanced bioinformatics analysis of RNA sequencing data and genomic databases using R. Explore allelic imbalances, SNP variants, and phylogenetic trees to uncover genetic insights and visualize complex data interactions.
Language: R - Size: 80.1 KB - Last synced: 5 days ago - Pushed: 6 days ago - Stars: 0 - Forks: 0
TheOrangeBraincell/DetectSpliceVariant
Repository for method to analyse the relationship between germline variants and somatic mutations and alternative splicing in breast cancer patients based on RNA-Seq data,
Language: Python - Size: 390 KB - Last synced: 14 days ago - Pushed: 14 days ago - Stars: 0 - Forks: 0
shobeirimajid/GenoPartake
Decentralized data market for GenoPharmatic information
Size: 2.93 KB - Last synced: 21 days ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 0
brentp/echtvar
using all the bits for echt rapid variant annotation and filtering
Language: Rust - Size: 202 KB - Last synced: about 1 month ago - Pushed: 3 months ago - Stars: 130 - Forks: 9
single-cell-genetics/cellsnp-lite
Efficient genotyping bi-allelic SNPs on single cells
Language: C - Size: 824 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 115 - Forks: 11
single-cell-genetics/cellSNP
Pileup biallelic SNPs from single-cell and bulk RNA-seq data
Language: Python - Size: 224 KB - Last synced: 17 days ago - Pushed: almost 2 years ago - Stars: 71 - Forks: 11
WeirauchLab/RELI
Regulatory Element Locus Intersection (RELI) Analysis
Language: C++ - Size: 225 KB - Last synced: 8 months ago - Pushed: over 3 years ago - Stars: 8 - Forks: 5
Raisa-NN/BINF-5354
Final Project - Post Genomic Analysis
Size: 986 KB - Last synced: 9 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0
mframpton/transplot
The transplot package can be used to make multi-track plots of Next Generation Sequencing (NGS) data for gene transcripts, namely for depth of coverage and for the distribution of variants and protein domains.
Language: Python - Size: 888 KB - Last synced: 10 months ago - Pushed: about 6 years ago - Stars: 3 - Forks: 0
ronaldosfjunior/VarSleuth
An R package for interpreting genetic variants according to the ACMG guidelines.
Language: R - Size: 16.6 KB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 0
alexhaislip/Oden_Biohacking
At The ODIN, we believe the future is going to be dominated by genetic engineering and consumer genetic design will be a big part of that. We are making that happen by creating kits and tools that allow anyone to make unique and usable organisms at home or in a lab or anywhere.
Size: 1.95 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 2 - Forks: 0
zeyang-shen/maggie
Bioinformatic approach to identify functional transcription factor binding motifs
Language: Python - Size: 169 MB - Last synced: over 1 year ago - Pushed: about 2 years ago - Stars: 7 - Forks: 0
dcchang/gene-variant-extractor 📦
Extracting gene variants from supplemental data files of human genomics research articles.
Language: Python - Size: 61 MB - Last synced: about 2 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0
cx0/llm-for-clinical-variants
Data repository for NeurIPS 2022 LMRL workshop paper.
Language: Jupyter Notebook - Size: 17 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0
rezacsedu/Convolutional-embedded-networks
Convolutional Embedded Networks for Population Scale Clustering and Bio-ancestry Inferencing
Language: Python - Size: 376 KB - Last synced: over 1 year ago - Pushed: over 4 years ago - Stars: 10 - Forks: 1
tkonopka/GeneticThesaurus
Thesaurus for genetic variants
Language: Java - Size: 1.2 MB - Last synced: 4 months ago - Pushed: over 6 years ago - Stars: 8 - Forks: 1
comorbidity/medgen-umls
NCBI Medical Genetics, UMLS Unified Medical Language System Concepts and PubMed linked citations
Language: Shell - Size: 5.17 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0
claramoreau9/NeuropsychiatricCNVs_Connectivity
The general impact of haploinsufficiency on brain connectivity underlies the pleiotropic effect of neuropsychiatric CNVs
Language: R - Size: 38.8 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 2 - Forks: 1
AlexiaJM/LEGIT
An R package for the Latent Environmental & Genetic InTeraction (LEGIT) model
Language: R - Size: 2.25 MB - Last synced: 11 months ago - Pushed: over 3 years ago - Stars: 11 - Forks: 2
NavpreetDevpuri/DNAc
DNAc is a programming language for DNAs.
Size: 37.1 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 0
tAndreani/RNAseQTL
Collection of scripts to map eQTL with RNAseq Data and Genotype by Sequencing
Language: R - Size: 17.6 KB - Last synced: over 1 year ago - Pushed: over 5 years ago - Stars: 3 - Forks: 0
