GitHub topics: dna-processing

Repositories

Morteza1814/PARMIK

PARMIK is a fast and memory-efficient tool for identifying the "Partial Match" region between two genomic sequences.

Language: C++ - Size: 274 MB - Last synced at: 29 days ago - Pushed at: 29 days ago - Stars: 0 - Forks: 1

Gagniuc/Sequence-Logo-relative-style

Sequence Logo - relative style is an alternative that provides full control over how the graphics of a Sequence Logo should look like, and is an alternative to an application called WebLogo. All the inner workings of this open source application are written in native javascript.

Language: HTML - Size: 175 KB - Last synced at: 12 days ago - Pushed at: about 3 years ago - Stars: 6 - Forks: 0

liberu-genealogy/php-dna

DNA processing and manipulating for PHP 8.3 / PHP 8.4

Language: PHP - Size: 753 KB - Last synced at: 13 days ago - Pushed at: about 1 month ago - Stars: 31 - Forks: 23

domenico-rgs/AWSS

Cloud-based Web Application to compute the longest common substring between two DNA strings.

Language: HCL - Size: 9.53 MB - Last synced at: 4 days ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0

MAGICS-LAB/DNABERT_2

[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

Language: Shell - Size: 847 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 289 - Forks: 66

slowikj/seqR

fast and comprehensive k-mer counting package

Language: C++ - Size: 1.72 MB - Last synced at: 21 days ago - Pushed at: over 3 years ago - Stars: 18 - Forks: 1

Ramy-Badr-Ahmed/Bioinformatics-Misc-Scripts

Miscellaneous Scripts in Bioinformatics

Language: Python - Size: 9.34 MB - Last synced at: 17 days ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

paulstothard/sequence_manipulation_suite

A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipulation Suite is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.

Size: 1.02 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 59 - Forks: 23

NRCan/Q2Pipe

Qiime2 based pipeline designed to facilitate and standardise ecological studies by metabarcoding using Illumina Miseq data

Language: Shell - Size: 4.05 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 1 - Forks: 0

OTPiccolo/hcat-gui

HCAT GUI is a visual tool to analyze and manipulate DNA sequence data.

Language: Java - Size: 780 KB - Last synced at: about 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

OTPiccolo/hcat-cli

HCAT CLI is a command line interface tool to analyze DNA sequence data.

Language: Java - Size: 300 KB - Last synced at: about 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

mmferrari/SeqMutationsUtils

Utility to generate codon mutations of a given coding DNA sequence

Language: Python - Size: 15.6 KB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0

mmferrari/ComplSeqUtils

Utility to determine complementary DNA/RNA subsequences

Language: Python - Size: 16.6 KB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0

ckorfmann/snp-counter

Counts all SNP mutations in .map file

Language: Python - Size: 64.5 KB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

Syedkumailhaider512/TrueDNA

TrueDNA is a comprehensive and powerful computational biology project focused on DNA prediction and DNA replication. This GitHub repository serves as a central hub for the TrueDNA project, tools, and resources for researchers, computational biologists, and AI enthusiasts working in the field of artificial intelligence and genomics.

Language: Python - Size: 5.12 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 1

xerosic/dna-to-protein

Small school project to convert from DNA to mRNA to proteins using C++

Language: C++ - Size: 25.4 KB - Last synced at: 5 days ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

Gagniuc/Objective-Digital-Stains

This is an application that shows the informational structure of DNA sequences. The objective digital stain (ODS) is represented by a distribution of points on a two-dimensional image, which reflects the information structure inside a DNA/RNA sequence.

Language: HTML - Size: 111 KB - Last synced at: 12 days ago - Pushed at: about 3 years ago - Stars: 3 - Forks: 2

Gagniuc/Objective-Digital-Stains-in-PHP

This code generates Objective Digital Stains (ODSs) and it is implemented in PHP. On ODSs, the information content (IC) is represented vertically on the y-axis and the frequency of different letters is represented horizontally on the x-axis.

Language: PHP - Size: 58.6 KB - Last synced at: about 2 months ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 0

Gagniuc/Simple-JS-implementation-of-Objective-Digital-Stains

Simple JS implementation of Objective Digital Stain (ODS) produces ODS images from DNA sequences. On ODSs, the information content (IC) is represented vertically on the y-axis and the frequency of different letters is represented horizontally on the x-axis.

Language: HTML - Size: 125 KB - Last synced at: about 2 months ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 0