Lattice-Automation/icor-codon-optimization

RNN-based Codon Optimization Tool. Publication: https://doi.org/10.1186/s12859-023-05246-8

Language: Python - Size: 29.5 MB - Last synced at: 3 days ago - Pushed at: about 2 years ago - Stars: 66 - Forks: 13

BrenoFariasdaSilva/University

Here you can find basically most of the exercises I'm solving during my University journey. This repo will contain lots of folders inside of it, each of one related to one subject. It won't be limited to one language.

Language: Jupyter Notebook - Size: 50.1 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 1 - Forks: 0

Adibvafa/CodonTransformer

CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.

Language: Python - Size: 20.5 MB - Last synced at: 23 days ago - Pushed at: 26 days ago - Stars: 135 - Forks: 16

SouradiptoC/CodonU

A python project for analysis of codon usage for gene or genome analysis

Language: Python - Size: 64.4 MB - Last synced at: 23 days ago - Pushed at: 6 months ago - Stars: 21 - Forks: 1

JAEYOONSUNG/DNMB

Comprehensive in silico genomic analysis pipeline for domesticating non-model bacteria

Language: R - Size: 64.6 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

marioroy/mce-sandbox

Parallel demonstrations for counting and printing prime numbers

Language: Perl - Size: 921 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 3 - Forks: 1

apahl/ds_tools

Misc helpers for datasciencing, written in Codon.

Language: Shell - Size: 5.86 KB - Last synced at: 10 days ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0

dominiquefastus/nustruDB

Fetch nucleotide sequences for PDB and Uniprot structures.

Language: Python - Size: 4.13 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

NHSDigital/codonPython

The codon project was created to increase code sharing, code consistency, coding standards, and encourage collaboration. Package documentation is available on the GitHub pages. codonPython aims to reduce the barrier for entry for analysis and provide software development experience for those at a higher level of technical ability.

Language: Python - Size: 9.3 MB - Last synced at: 16 days ago - Pushed at: 6 months ago - Stars: 5 - Forks: 6

citrus-mizuha/Codoner

システム上で使用する暗号化システムに、mRNAコドンの仕組みを応用する研究です

Language: Python - Size: 57.6 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 3 - Forks: 0

Tenchi2xh/RTOW-Codon

Implementation of the "Ray Tracing in One Weekend" books using Codon

Language: Python - Size: 2.61 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

FxllenCode/codont

overcomplicated biology project spaghetti code written at 3 am ¯\_(ツ)_/¯

Language: JavaScript - Size: 34.2 KB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

ct-clmsn/codon_openshmem

OpenSHMEM bindings for the Codon Python compiler

Language: Makefile - Size: 6.84 KB - Last synced at: 2 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

chaupka/codon_harmonization

A script for codon harmonization.

Language: Python - Size: 19.5 KB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0

wbrickner/genonym 📦

Interspecies protein translator + translation optimizer

Language: JavaScript - Size: 20.5 KB - Last synced at: about 22 hours ago - Pushed at: about 1 year ago - Stars: 5 - Forks: 1

DarkAdin/PythORF

A little independent Python algorithm capable of finding Open Reading Frames in any genomic sequence.

Language: Python - Size: 66.4 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

mmferrari/SeqMutationsUtils

Utility to generate codon mutations of a given coding DNA sequence

Language: Python - Size: 15.6 KB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0

helendragon/StretchFinder

StretchFinder is a tool that helps to analyze the codon composition in genomes. It has the basic pipelines needed in order to draw preliminary conclusions about the codon usage and composition of genomes.

Language: HTML - Size: 57.7 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

santiagosnchez/CodonAlign

Generates a codon-based alignment from an amino acid alignment and CDS sequences

Language: Python - Size: 25.4 KB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

luksaiterugile/reverseTranslate

Translate peptide sequences into genes using the nucleus genetic code and E. coli codon frequencies.

Language: Perl - Size: 17.6 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

erimerdal/StopReassignDetector

A Simple Stop Codon Reassignment Detector in Silico

Language: MAXScript - Size: 9.51 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

juanvillada/CodG

Analysis of codon positional dependency

Language: R - Size: 211 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 3 - Forks: 0

kyu999/codon_usage_chart

Language: JavaScript - Size: 133 KB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

0xF6/Genome

🧬🦠🧪 [research][wip] Library for working with DNA, RNA, and etc acids

Language: C# - Size: 14.3 MB - Last synced at: 12 months ago - Pushed at: over 2 years ago - Stars: 6 - Forks: 0

mutalyzer/backtranslate

Protein to RNA reverse translation

Language: Python - Size: 156 KB - Last synced at: 16 days ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 1

yhs0602/Codonmaster-ios3

Memorize triplet codes with a simple game.

Language: Swift - Size: 597 KB - Last synced at: about 1 month ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

waqasuddinkhan/MACARON-GenMed-LabEx

Multi-bAse Codon-Associated variant Re-annotatiON (MACARON)

Language: Python - Size: 121 KB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 7 - Forks: 3

samdarshihawk/Codon-decoder

Codon decoder, taking a input from user, then the program will display the type protein created by the codon

Language: Java - Size: 1000 Bytes - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0