ghga-de/nf-snvcalling

a Nextflow SNV calling and annotation pipeline based on DKFZ-ODCF/SNVCallingWorkflow

Language: Python - Size: 16.7 MB - Last synced at: 14 days ago - Pushed at: 5 months ago - Stars: 1 - Forks: 0

zhukovanadezhda/schizophrenia-prediction

Language: Jupyter Notebook - Size: 1.27 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

nickveltmaat/SNVcaller

Pipeline to call SNV's with 4 tools (VarDict, LoFreq, Mutect2 & SiNVICT)

Language: Python - Size: 193 KB - Last synced at: about 2 months ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 1

ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation

This workflow performs annotation on SNV and INDEL VCFs.

Language: JavaScript - Size: 127 KB - Last synced at: about 2 months ago - Pushed at: about 7 years ago - Stars: 4 - Forks: 0

waqasuddinkhan/MACARON-GenMed-LabEx

Multi-bAse Codon-Associated variant Re-annotatiON (MACARON)

Language: Python - Size: 121 KB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 7 - Forks: 3

ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools

A CWL version of the Seqware OxoG workflow. This repository also contains scripts and dockerfiles used by the stand-alone versions of these components.

Language: Shell - Size: 117 KB - Last synced at: about 2 months ago - Pushed at: over 6 years ago - Stars: 4 - Forks: 6