GitHub topics: rna-seq-data
DiseaseTranscriptomicsLab/markeR
🧬 Toolkit for Evaluating Gene Sets as Phenotype Markers in R
Language: R - Size: 176 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 4 - Forks: 0
seandavi/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Size: 1.87 MB - Last synced at: 11 days ago - Pushed at: 12 days ago - Stars: 3,433 - Forks: 1,021
QuangHa2k1/awesome-express
Enhanced Express framework with built-in HTTP/2 support, CLI scaffolding tools, and seamless JWT authentication for modern Node.js applications.
Language: TypeScript - Size: 159 KB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 0 - Forks: 0
egaffo/CirComPara
:microscope: A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
Language: R - Size: 16 MB - Last synced at: 17 days ago - Pushed at: about 5 years ago - Stars: 16 - Forks: 11
federicomarini/awesome-expression-browser
😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎
Size: 300 KB - Last synced at: about 1 month ago - Pushed at: 9 months ago - Stars: 136 - Forks: 38
SoniaRuiz/rytenlab-website
Website (.NET Core MVC architecture) for the RytenLab team (https://rytenlab.com/). It also contains the specification for the .NET Core REST API of the RytenLab Team (https://rytenlab.com/swagger/index.html).
Language: JavaScript - Size: 99.4 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 1 - Forks: 0
IBCHgenomic/rnaseqgo
golang standalone for complete rna-seq
Size: 0 Bytes - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0
federicomarini/GeneTonic
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
Language: R - Size: 121 MB - Last synced at: about 1 month ago - Pushed at: 3 months ago - Stars: 78 - Forks: 10
federicomarini/pcaExplorer
pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
Language: R - Size: 60 MB - Last synced at: about 1 month ago - Pushed at: 3 months ago - Stars: 56 - Forks: 17
GoekeLab/proActiv
Estimation of Promoter Activity from RNA-Seq data
Language: R - Size: 194 MB - Last synced at: 7 days ago - Pushed at: 13 days ago - Stars: 53 - Forks: 15
nuno-agostinho/psichomics
Interactive R package to quantify, analyse and visualise alternative splicing
Language: R - Size: 60.3 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 37 - Forks: 11
nsalomonis/altanalyze
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
Language: Python - Size: 264 MB - Last synced at: 15 days ago - Pushed at: about 3 years ago - Stars: 103 - Forks: 32
immunogenomics/amp_phase1_ra_viewer
🌻 View single-cell RNA-seq and mass cytometry data in synovial tissues from patients with RA or OA.
Language: R - Size: 1.19 MB - Last synced at: about 1 month ago - Pushed at: about 6 years ago - Stars: 4 - Forks: 2
uc-bd2k/GREIN
GREIN : GEO RNA-seq Experiments Interactive Navigator
Language: HTML - Size: 38.2 MB - Last synced at: 3 months ago - Pushed at: about 6 years ago - Stars: 49 - Forks: 19
pfrsch/EBAC-workshop
Ciência de Dados na Saúde: Construir um modelo para predizer quando uma pessoa tem câncer dado um exame de sequenciamento do RNA
Language: Jupyter Notebook - Size: 0 Bytes - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0
fomightez/simulated_data
A repository for code that generates various simulated data.
Language: Python - Size: 1.02 MB - Last synced at: 2 months ago - Pushed at: 9 months ago - Stars: 1 - Forks: 0
shalinis602/RNASeq-GeneExpression-ML
This project aims to identify gene expression patterns associated with different conditions or diseases, leveraging advanced data processing and model training techniques. The analysis includes preprocessing RNA-Seq data, training multiple classifiers, and evaluating their performance to determine the most effective models for such biological data.
Language: Jupyter Notebook - Size: 116 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
theislab/MetaMap
The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.
Language: HTML - Size: 10.9 MB - Last synced at: 7 months ago - Pushed at: over 6 years ago - Stars: 12 - Forks: 8
kevincjnixon/BinfTools
Useful R functions for Multi-omics analyses
Language: R - Size: 5.6 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 2
wilkinsonlab/epigenomics_pipeline
Epigenomics workflow system for the semi-automated analysis of NGS data
Language: Jupyter Notebook - Size: 166 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 1
knowmics-lab/RNAdetector
RNAdetector: a free user-friendly and stand-alone software for RNA-Seq data analysis
Language: JavaScript - Size: 73.2 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 8 - Forks: 8
hbctraining/DGE_workshop 📦
Language: HTML - Size: 37.2 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 329 - Forks: 162
sohilsshah91/nyhais-tcga-series-kmeans
Language: Jupyter Notebook - Size: 23.3 MB - Last synced at: almost 2 years ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0
MG-RAST/myM5NR
M5NRv2 -- non-redundant protein and rRNA database integration
Language: Perl - Size: 10.8 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 3
kjohnsen/MMAPPR2data
Sample Data for MMAPPR2
Language: R - Size: 629 KB - Last synced at: almost 2 years ago - Pushed at: almost 6 years ago - Stars: 1 - Forks: 1
mchialva/RNA2M
Scripts used to analyze tomato meta-transcriptome from short-read host RNA-seq data in Chialva et al. (2020)
Language: R - Size: 2.95 MB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0
niqolla/ieo_RNAseq_project
eproduciton of a publication regarding gene expression in different phases of lactation in humans
Language: TeX - Size: 22.6 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
sivkri/miRNASeq-DE-Analysis-QC
Performing RNA-Seq data analysis and quality control using DESeq2 in R.
Language: R - Size: 110 KB - Last synced at: 4 months ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
adeschen/SignatureHeatmap
R package to create heatmaps using signature gene list and transcriptomic data
Language: R - Size: 1.94 MB - Last synced at: 4 months ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0
Hemangini09/RNA-seq-data-analysis-with-edgeR-
Perform RNA-seq data analysis with edgeR package of bioconductor
Language: R - Size: 1.95 KB - Last synced at: 11 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
Hemangini09/RNA-seq-data-analysis-with-DESeq2
Performing RNA-seq data analysis with DESeq2 package of bioconductor
Language: R - Size: 1000 Bytes - Last synced at: 11 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
hbctraining/Intro-to-R-with-DGE 📦
Language: R - Size: 39.5 MB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 54 - Forks: 43
williamjeong2/snakemake_RNA-seq
A repository for RNA-seq workflow
Language: R - Size: 12.9 MB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0
arfesta/Breeding-Value-Prediction
Predicting NCSU Coastal Breeding Values using RNA Seq data
Language: HTML - Size: 1.15 GB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
sing-group/dewe
DEWE (Differential Expression Workflow Executor) is an open source application for easily executing Differential Expression analyses in RNA-Seq data.
Language: Java - Size: 1.38 MB - Last synced at: 25 days ago - Pushed at: over 6 years ago - Stars: 3 - Forks: 0
Transipedia/dekupl
Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.
Size: 47.6 MB - Last synced at: about 2 years ago - Pushed at: almost 7 years ago - Stars: 12 - Forks: 2
bissessk/RNA-seq-Analysis-of-Control-and-NRDE2-depleted-Breast-Cancer-Cells
Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.
Language: Shell - Size: 418 KB - Last synced at: over 2 years ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0
jacobwindsor/tmerge Fork of guigolab/tmerge
Build highly accurate transcripts from long-read RNA data
Language: Python - Size: 1.17 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0
keslingmj/RNASeq
Analyses of RNA-Seq Data
Language: CSS - Size: 44.3 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 1 - Forks: 0
tAndreani/RNAseQTL
Collection of scripts to map eQTL with RNAseq Data and Genotype by Sequencing
Language: R - Size: 17.6 KB - Last synced at: over 2 years ago - Pushed at: over 6 years ago - Stars: 3 - Forks: 0
elizabethpermina/RNA-Seq-tutorial-Otago-2017
RNA-Seq tutorial materials - slides, training data, code lines
Language: HTML - Size: 758 MB - Last synced at: 7 months ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 1
