GitHub topics: gene-expression-analysis
Pulkit1704/cancer-classifier
A classification model to classify samples based on their gene expression profiles
Language: Jupyter Notebook - Size: 26 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 0 - Forks: 0
bnjenner/impaqt
Identifies Multiple Peaks and Qauntifies Transcripts. Quantifies gene expression from TAGseq experiments by identifying transcript isoforms containing distinct terminal exons.
Language: C++ - Size: 70.7 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 1 - Forks: 0
QuadraTabulator/BrarAvgGeneExp-2024
My Spring 2024 term project for NYU's Applied Genomics graduate course (M.S. Biology). Using data from Brar et al, this is a determination and analysis of average gene expression from the pericentromeric, subtelomeric, and centromeric regions of Chromosomes I to XVI on Saccharomyces cerevisiae (baker's yeast) during traditional time course meiosis.
Language: Shell - Size: 14.2 MB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 1 - Forks: 0
dhanyashri-g/covid19-drug-design
Identification of small molecule therapeutics against COVID-19 using phytochemical screening, gene expression prediction, enrichment analysis, and druglikeness evaluation.
Size: 0 Bytes - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0
NIGMS/Bulk-and-Single-Cell-RNAseq
In this module, you will take a deeper look at RNA-sequencing using single-cell approaches and miRNA sequencing, and investigate their impacts on gene regulation
Language: Jupyter Notebook - Size: 6.34 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0
VUbels/GUIdedRNA
Docker based GUI for in-depth but accessible scRNA annotation and analysis
Language: R - Size: 330 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0
snakemake-workflows/rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
Language: Python - Size: 16.6 MB - Last synced at: 4 months ago - Pushed at: 12 months ago - Stars: 339 - Forks: 208
lhartmanis/compound-screen
Code and analysis scripts for analyzing newly transcribed RNA in large-scale compound screen experiments
Language: Python - Size: 14.6 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0
shussin245/GeneExpressionAnalysis
A tutorial demonstrating how to analyze gene expression data using elastic net models to predict patient responses to immunotherapy, focusing on regularization, cross-validation, and feature importance.
Language: Jupyter Notebook - Size: 627 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0
BothBosu/Gene-Expression-EDA-of-Breast-Tumor-and-Normal-Tissue
This project involves an exploratory data analysis (EDA) of gene expression in breast tumor and normal tissue as part of the ICCS361 course at Mahidol University International College.
Language: Jupyter Notebook - Size: 7.32 MB - Last synced at: 3 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0
Tolupeter/Tolulope-
This toolkit provides Python code for preprocessing, quality control, clustering, and visualization of single-cell RNA sequencing data using Scanpy. Ideal for deep insights into cell populations and gene expression.
Size: 0 Bytes - Last synced at: 7 days ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
Saherpathan/BioInnovate
Gene expression analysis and classification using XGBoost and Differential Expression Analysis (DES)
Language: Jupyter Notebook - Size: 2.79 MB - Last synced at: 5 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
Aniket7651/biosys-net
Bioinformatics package created in C# and python, which can analyze biological data such as DNA, RNA and protein sequences, Biological Databases Scrapping, As well as 'GEO Analysis' offers a variety of analysis on RNA-seq. Preprocessing, parsing various biological file formats (FASTA, PDB, SOFT, FASTQ, etc.), this all using C# language and dotnet.
Language: C# - Size: 6.36 MB - Last synced at: about 1 month ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
shalinis602/RNASeq-GeneExpression-ML
This project aims to identify gene expression patterns associated with different conditions or diseases, leveraging advanced data processing and model training techniques. The analysis includes preprocessing RNA-Seq data, training multiple classifiers, and evaluating their performance to determine the most effective models for such biological data.
Language: Jupyter Notebook - Size: 116 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
jawa23bio/RNA-Seq
RNA-Seq analysis pipeline for investigating transcriptional changes during mammalian cardiac regeneration.
Language: HTML - Size: 985 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
sivkri/small-RNA-Seq-Analysis
scripts and resources for performing miRNA sequencing analysis using tools like mirPRo and miRDeep2. Explore the code to process reads, map them to the genome, quantify known miRNAs, identify novel miRNAs, and browse the results
Language: Shell - Size: 1.71 MB - Last synced at: 4 months ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0
thisisyichenzhang/matrix_completion
Scaled matrix completion and cell deconvolution with NanoString data, Yichen Zhang, 2019
Language: R - Size: 26.4 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
sivkri/RBP-Data-Processing
RBP-Data-Processing is a repository containing R code for processing RNA-binding protein (RBP) datasets. The code imports the data table, performs data cleaning and transformation operations, and saves the processed dataset. It provides a convenient and reproducible workflow for analyzing RBP data obtained from external sources.
Language: R - Size: 991 KB - Last synced at: 4 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0