GitHub topics: saccharomyces-cerevisiae

Repositories

QuadraTabulator/BrarAvgGeneExp-2024

My Spring 2024 term project for NYU's Applied Genomics graduate course (M.S. Biology). Using data from Brar et al, this is a determination and analysis of average gene expression from the pericentromeric, subtelomeric, and centromeric regions of Chromosomes I to XVI on Saccharomyces cerevisiae (baker's yeast) during traditional time course meiosis.

Language: Shell - Size: 14.2 MB - Last synced at: 26 days ago - Pushed at: 26 days ago - Stars: 1 - Forks: 0

mcs383/Saccharomyces-cerevisiae-Mash-Database-Generator

An automated GitHub Actions workflow for creating up-to-date Saccharomyces cerevisiae mash sketch databases for strain analysis

Size: 37.1 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

SysBioChalmers/yeast-GEM

The consensus GEM for Saccharomyces cerevisiae

Language: MATLAB - Size: 71.1 MB - Last synced at: 2 months ago - Pushed at: 4 months ago - Stars: 109 - Forks: 49

irahorecka/sgd-rest

Saccharomyces Genome Database (SGD) REST API wrapper

Language: Python - Size: 121 KB - Last synced at: 28 days ago - Pushed at: 3 months ago - Stars: 5 - Forks: 0

MetabolicEngineeringGroupCBMA/Cunha_et_al_2017

Costa, C. E., Romaní, A., Cunha, J. T., Johansson, B., & Domingues, L. (2017). Integrated approach for selecting efficient Saccharomyces cerevisiae for industrial lignocellulosic fermentations: Importance of yeast chassis linked to process conditions. Bioresource Technology, 227, 24–34.

Language: Jupyter Notebook - Size: 743 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 1 - Forks: 0

DrPaulValle/Modelling-Saccharomyces-cerevisiae-for-the-production-of-fermented-beverages-BEER-2024-

In this work, we formulate a mechanistic model consisting of three first-order Ordinary Differential Equations (ODEs) to describe ethanol production for mezcal by the Saccharomyces cerevisiae yeast using glucose and fructose as substrates.

Language: Python - Size: 839 KB - Last synced at: 4 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

LiLabTsinghua/Yeast-MetaTwin

The metabolic twin model of yeast

Language: Jupyter Notebook - Size: 238 MB - Last synced at: 9 months ago - Pushed at: 10 months ago - Stars: 2 - Forks: 1

FS-CodeBase/propagon_replication_and_transmission

A structured model and likelihood approach to estimate yeast prion propagon replication rates and their asymmetric transmission

Language: MATLAB - Size: 2.96 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

AstraBert/saccharomyces-pythia

Saccharomyces cerevisiae information, gene calling and ORF identification assistant

Language: Python - Size: 9.9 MB - Last synced at: 3 days ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 0

nicolo-tellini/ils-pipeline

ABBA-BABA test conducted on Saccharomyces cerevisiae strains using whole-genome alignment.

Language: R - Size: 71.3 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

cectri/Robustness_Trade-offs

Performance and Robustness trade-offs in yeast - analysis of phenotypic data from 24 Saccharomyces cerevisiae strains grown in 29 conditions

Size: 16.2 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

mukherjeevaskar267/CRISPRi_Screening_AceticAcid

Phenotypic screening of a CRISPRi strain library [Smith et 2017, Mol Syst Biol (2017)13:913] for acetic acid tolerance targeting essential and respiratory essential genes in Saccharomyces cerevisiae

Language: R - Size: 263 MB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

barberislab/Forkhead-mediated_regulation

A summarizing analysis of Fkh1,2 target genes as indicated by 6 ChIP binding studies and an overexpression and deletion study | https://doi.org/10.1016/j.csbj.2022.03.033

Language: Jupyter Notebook - Size: 13.1 MB - Last synced at: almost 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0