StructuralGenomicsConsortium/CNP11-DENVRdrp-LifeChem

An SGC Chemical Networks Project devoted to the DENV Rdrp, focusing specifically on exploring the LifeChemicals library. Use the link below to learn about our other READDI-AViDD projects.

Size: 19.5 MB - Last synced at: about 15 hours ago - Pushed at: about 16 hours ago - Stars: 0 - Forks: 0

NL-BioImaging/biomero

BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster

Language: Python - Size: 4.5 MB - Last synced at: about 5 hours ago - Pushed at: about 2 months ago - Stars: 16 - Forks: 4

StructuralGenomicsConsortium/CNP25-CHIKV-nsP3-Macrodomain

This project aims to develop a chemical probe of CHIKV-nsP3-macrodomain starting from a fragment screen

Size: 166 MB - Last synced at: 20 days ago - Pushed at: 21 days ago - Stars: 1 - Forks: 0

StructuralGenomicsConsortium/CNP27-SARS-CoV-2-NSP14

This project aims to develop a chemical probe of SARS-CoV2-NSP14 starting from a fragment screen

Size: 27.8 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

biobricks-ai/toxcast

EPA data on 1,800 chemicals across 700+ assay endpoints

Language: R - Size: 13.7 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0

sigven/AutoDRY

Autophagy Dynamics Repository Yeast

Language: R - Size: 294 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

ideaconsult/orange3-toxfairy

Python library and Orange3 widget for high-throughput screening data preprocessing, toxicity scoring, and FAIRification

Language: Python - Size: 1.03 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

sigven/oncoEnrichR

Explore the cancer relevance of your gene list

Language: R - Size: 1.9 GB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 49 - Forks: 10

Prospero1988/AutoDock_vina_pipeline

This repository provides an automated docking solution for ligands and receptor proteins using AutoDock Vina and P2Rank, enhanced with a Streamlit-based web interface for simple and intuitive browser-based operation. It supports high-throughput workflows and includes SLURM integration for advanced task management while remaining easy to use locally

Language: Python - Size: 18.8 MB - Last synced at: 29 days ago - Pushed at: 2 months ago - Stars: 4 - Forks: 1

lhartmanis/compound-screen

Code and analysis scripts for analyzing newly transcribed RNA in large-scale compound screen experiments

Language: Python - Size: 14.6 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

StructuralGenomicsConsortium/CNP21-CHIKVhelicase-Asinex

An SGC Open Chemistry Networks Project (number 21) dedicated to finding hits vs CHIKV nsp2 helicase based on a HTS of a Asinex library.

Size: 21.4 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

StructuralGenomicsConsortium/CNP17-DENVRdrp-EnamineCovalent

An SGC Chemical Networks Project devoted to the DENV Rdrp, focusing specifically on exploring the Enamine covalent library. Use the link below to learn about other READDI-AViDD projects.

Size: 17.4 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

osharma08/ovarian_cancer_morphology

Ovarian cancer cell line in coculture with fibroblasts cell line: morphology analysis

Language: Jupyter Notebook - Size: 53.4 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

gautammalik-git/AutoDock-GPU-Pipeline

This pipeline facilitates setting up ligand docking against a protein using AutoDock-GPU. It streamlines the process of docking a ligand library onto a protein structure, leveraging the enhanced performance of AutoDock-GPU for faster results.

Language: Python - Size: 43.9 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 3 - Forks: 0

scbirlab/hts-tools

🏮 Parsing and analysing platereader absorbance and fluorescence data.

Language: Python - Size: 3.44 MB - Last synced at: about 1 month ago - Pushed at: 6 months ago - Stars: 0 - Forks: 1

Chemios/chemios

Chemios Framework 👨🏾‍🔬: Accelerating Science through Automation

Language: Python - Size: 224 KB - Last synced at: about 8 hours ago - Pushed at: over 3 years ago - Stars: 36 - Forks: 4

StructuralGenomicsConsortium/CNP19-CHIKVhelicase-Covalent

An SGC Open Chemistry Networks Project (number 19) dedicated to finding hits vs CHIKV nsp2 helicase based on a HTS of a Enamine Covalent library.

Size: 8.13 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

gmp007/perovskene-materials

Frontiers in 2D Perovskene: Tailoring ABC3 Perovskite Structures for Next-Generation Material Applications

Language: Jupyter Notebook - Size: 4.31 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 3 - Forks: 0

ydu-sci/Binding_Curve_Viewer

Visualizing the Equilibrium and Kinetics of Protein-Ligand Binding and Competitive Binding

Language: Python - Size: 99.6 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

GoranTomacruz/CIPHERCatLib

Catalyst Library for Material Discovery Studies, including Transition Metal and Transition Metal Derivatives. Materials are compiled from online open-source databases, as well as own calculations. A GUI is included for convenient input file generation. Please expect this to be updated regularly.

Language: Python - Size: 119 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

biobricks-ai/tox21

Tox21 quantitative high throughput screening (qHTS) 10K library data

Language: Clojure - Size: 34.2 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1

NL-BioImaging/biomero-scripts

Scripts for use with BIOMERO / the Omero Slurm Client library

Language: Python - Size: 76.2 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

LiamWilbraham/polyhts

High-level module for ultra-fast structural optimisation and property calculations of organic co-polymers.

Language: Python - Size: 1.58 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 1

Anivader/HoloScreen-onco

High-throughput detection and enumeration of tumor cells in blood using Digital Holographic Microscopy (DHM) and Deep Learning.

Language: MATLAB - Size: 75.2 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

cectri/Robustness_Trade-offs

Performance and Robustness trade-offs in yeast - analysis of phenotypic data from 24 Saccharomyces cerevisiae strains grown in 29 conditions

Size: 16.2 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

zuzg/drug-screening

💊 A project examining data from High Throughput Screening center in Poznan.

Language: Jupyter Notebook - Size: 13.9 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 0

rbBosshard/pytcpl

pytcpl is a streamlined Python package that incorporates the levels 4 to 6 of tcpl+tcplFit2, providing concentration-response curve fitting and hit-calling. It utilizes the Invitrodb version 4.1 release (September 21, 2023) as backend database.

Language: HTML - Size: 5.42 GB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

mukherjeevaskar267/CRISPRi_Screening_AceticAcid

Phenotypic screening of a CRISPRi strain library [Smith et 2017, Mol Syst Biol (2017)13:913] for acetic acid tolerance targeting essential and respiratory essential genes in Saccharomyces cerevisiae

Language: R - Size: 263 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

JacksonBurns/Crow 📦

Crow Really Outta Work - User Friendly GUI for High Throughput Experimentation Automation

Language: Python - Size: 37.6 MB - Last synced at: 28 days ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 0

YoavLotem/NeuriteOutgrowth

A tool for automatic neurite outgrowth and cell viability estimation using deep learning and graph theory.

Language: Jupyter Notebook - Size: 46.4 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

LiamWilbraham/pychemlp

Easy-to-use python module for training multi-layer perceptrons (neural networks) from molecular SMILES and known associated properties

Language: Python - Size: 11.9 MB - Last synced at: over 1 year ago - Pushed at: about 6 years ago - Stars: 9 - Forks: 5

cectri/Quantification-of-microbial-robustness

R Scripts for quantification of microbial robustness from high-throughput screenings

Size: 511 KB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

jrem-chem/GPCRLigNet

Code for an artificial neural net classifier of small molecule GPCR activity

Language: PureBasic - Size: 521 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

kjappelbaum/structure_comp 📦

Python package for removal of duplicates in (solid state) structural databases

Language: Python - Size: 1.75 MB - Last synced at: 7 days ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 1

oist/topcorneR

Plan and analyse large-scale liquid transfers

Language: R - Size: 5.16 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

benedictsaunders/polyHTS2

Language: Python - Size: 184 KB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 2

morchalabi/COMPARE-suite

Novel ultrafast suite for high-throughput & high-content multiparameter screening as in drug discovery. It has unique modules for QC, bias correction, similarity measurement, clustering and visualization. It can process hundreds of samples with many markers in a few hours not days & circumvents bath effect. It couples with any plate reader.

Language: R - Size: 32.6 MB - Last synced at: about 2 months ago - Pushed at: about 4 years ago - Stars: 2 - Forks: 0

EmanuelSoda/ScreenR

An R package that enables the user to perform High Throughput Biological Screening.

Language: R - Size: 44.6 MB - Last synced at: 14 days ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 1

sauriiiin/sau-matlab-toolkit

Sau's implementation of the MATLAB Colony Analyzer Toolkit and Bean MATLAB Toolkit to analyze high-throughput screening data.

Language: MATLAB - Size: 180 KB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

sauriiiin/lidetector

LI Detector analytical pipeline for colony-based high-throughput screens.

Language: MATLAB - Size: 82.4 MB - Last synced at: almost 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

kiranvad/MLCD

Metric Learning for Combinatorial Datasets

Language: MATLAB - Size: 202 MB - Last synced at: almost 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 1

Raman1121/OUR-2018

This repository contains the files created and used for the Opportunities for Undergraduate Research Program, 2018.

Language: Jupyter Notebook - Size: 8.29 MB - Last synced at: 5 months ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0