Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: high-throughput-screening
StructuralGenomicsConsortium/CNP19-CHIKVhelicase-Covalent
An SGC Open Chemistry Networks Project (number 19) dedicated to finding hits vs CHIKV nsp2 helicase based on a HTS of a Enamine Covalent library.
Size: 5.81 MB - Last synced: about 13 hours ago - Pushed: about 14 hours ago - Stars: 0 - Forks: 0
StructuralGenomicsConsortium/CNP21-CHIKVhelicase-Asinex
An SGC Open Chemistry Networks Project (number 21) dedicated to finding hits vs CHIKV nsp2 helicase based on a HTS of a Asinex library.
Size: 8.32 MB - Last synced: about 16 hours ago - Pushed: about 18 hours ago - Stars: 0 - Forks: 0
StructuralGenomicsConsortium/CNP11-DENVRdrp-LifeChem
An SGC Chemical Networks Project devoted to the DENV Rdrp, focusing specifically on exploring the LifeChemicals library. Use the link below to learn about our other READDI-AViDD projects.
Size: 18.7 MB - Last synced: 3 days ago - Pushed: 4 days ago - Stars: 0 - Forks: 0
StructuralGenomicsConsortium/CNP17-DENVRdrp-EnamineCovalent
An SGC Chemical Networks Project devoted to the DENV Rdrp, focusing specifically on exploring the Enamine covalent library. Use the link below to learn about other READDI-AViDD projects.
Size: 16.9 MB - Last synced: 6 days ago - Pushed: 7 days ago - Stars: 0 - Forks: 0
gmp007/perovskene-materials
Frontiers in 2D Perovskene: Tailoring ABC3 Perovskite Structures for Next-Generation Material Applications
Language: Jupyter Notebook - Size: 4.31 MB - Last synced: 19 days ago - Pushed: 19 days ago - Stars: 3 - Forks: 0
gautammalik-git/AutoDock-GPU-Pipeline
This pipeline facilitates setting up ligand docking against a protein using AutoDock-GPU. It streamlines the process of docking a ligand library onto a protein structure, leveraging the enhanced performance of AutoDock-GPU for faster results.
Language: Python - Size: 43 KB - Last synced: 24 days ago - Pushed: 24 days ago - Stars: 2 - Forks: 0
ydu-sci/Binding_Curve_Viewer
Visualizing the Equilibrium and Kinetics of Protein-Ligand Binding and Competitive Binding
Language: Python - Size: 99.6 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0
GoranTomacruz/CIPHERCatLib
Catalyst Library for Material Discovery Studies, including Transition Metal and Transition Metal Derivatives. Materials are compiled from online open-source databases, as well as own calculations. A GUI is included for convenient input file generation. Please expect this to be updated regularly.
Language: Python - Size: 119 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 1 - Forks: 0
biobricks-ai/toxcast
EPA data on 1,800 chemicals across 700+ assay endpoints
Language: R - Size: 13.7 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0
biobricks-ai/tox21
Tox21 quantitative high throughput screening (qHTS) 10K library data
Language: Clojure - Size: 34.2 KB - Last synced: about 1 month ago - Pushed: about 2 months ago - Stars: 0 - Forks: 1
NL-BioImaging/biomero-scripts
Scripts for use with BIOMERO / the Omero Slurm Client library
Language: Python - Size: 76.2 KB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0
NL-BioImaging/biomero
BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster
Language: Python - Size: 4.4 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 7 - Forks: 0
LiamWilbraham/polyhts
High-level module for ultra-fast structural optimisation and property calculations of organic co-polymers.
Language: Python - Size: 1.58 MB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 3 - Forks: 1
Anivader/HoloScreen-onco
High-throughput detection and enumeration of tumor cells in blood using Digital Holographic Microscopy (DHM) and Deep Learning.
Language: MATLAB - Size: 75.2 KB - Last synced: 4 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0
Chemios/chemios
Chemios Framework 👨🏾🔬: Accelerating Science through Automation
Language: Python - Size: 224 KB - Last synced: 3 months ago - Pushed: over 2 years ago - Stars: 35 - Forks: 5
cectri/Robustness_Trade-offs
Performance and Robustness trade-offs in yeast - analysis of phenotypic data from 24 Saccharomyces cerevisiae strains grown in 29 conditions
Size: 16.2 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0
zuzg/drug-screening
💊 A project examining data from High Throughput Screening center in Poznan.
Language: Jupyter Notebook - Size: 13.9 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 3 - Forks: 0
scbirlab/hts-tools
Parsing and analysing platereader absorbance and fluorescence data.
Language: Python - Size: 1.78 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0
rbBosshard/pytcpl
pytcpl is a streamlined Python package that incorporates the levels 4 to 6 of tcpl+tcplFit2, providing concentration-response curve fitting and hit-calling. It utilizes the Invitrodb version 4.1 release (September 21, 2023) as backend database.
Language: HTML - Size: 5.42 GB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0
mukherjeevaskar267/CRISPRi_Screening_AceticAcid
Phenotypic screening of a CRISPRi strain library [Smith et 2017, Mol Syst Biol (2017)13:913] for acetic acid tolerance targeting essential and respiratory essential genes in Saccharomyces cerevisiae
Language: R - Size: 263 MB - Last synced: 8 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
sigven/oncoEnrichR
Cancer-dedicated gene set interpretation
Language: R - Size: 1.9 GB - Last synced: 8 months ago - Pushed: 9 months ago - Stars: 48 - Forks: 10
JacksonBurns/Crow 📦
Crow Really Outta Work - User Friendly GUI for High Throughput Experimentation Automation
Language: Python - Size: 37.6 MB - Last synced: 3 days ago - Pushed: 9 months ago - Stars: 5 - Forks: 0
YoavLotem/NeuriteOutgrowth
A tool for automatic neurite outgrowth and cell viability estimation using deep learning and graph theory.
Language: Jupyter Notebook - Size: 46.4 MB - Last synced: 9 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0
lhartmanis/compound-screen
Code and analysis scripts for analyzing newly transcribed RNA in large-scale compound screen experiments
Language: Python - Size: 14.6 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0
Raman1121/OUR-2018
This repository contains the files created and used for the Opportunities for Undergraduate Research Program, 2018.
Language: Jupyter Notebook - Size: 8.29 MB - Last synced: 10 months ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0
LiamWilbraham/pychemlp
Easy-to-use python module for training multi-layer perceptrons (neural networks) from molecular SMILES and known associated properties
Language: Python - Size: 11.9 MB - Last synced: 8 months ago - Pushed: about 5 years ago - Stars: 9 - Forks: 5
cectri/Quantification-of-microbial-robustness
R Scripts for quantification of microbial robustness from high-throughput screenings
Size: 511 KB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0
jrem-chem/GPCRLigNet
Code for an artificial neural net classifier of small molecule GPCR activity
Language: PureBasic - Size: 521 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0
kjappelbaum/structure_comp 📦
Python package for removal of duplicates in (solid state) structural databases
Language: Python - Size: 1.75 MB - Last synced: over 1 year ago - Pushed: over 3 years ago - Stars: 1 - Forks: 2
oist/topcorneR
Plan and analyse large-scale liquid transfers
Language: R - Size: 5.16 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0
benedictsaunders/polyHTS2
Language: Python - Size: 184 KB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 1 - Forks: 2
morchalabi/COMPARE-suite
Novel ultrafast suite for high-throughput & high-content multiparameter screening as in drug discovery. It has unique modules for QC, bias correction, similarity measurement, clustering and visualization. It can process hundreds of samples with many markers in a few hours not days & circumvents bath effect. It couples with any plate reader.
Language: R - Size: 32.6 MB - Last synced: 4 months ago - Pushed: over 3 years ago - Stars: 2 - Forks: 0
EmanuelSoda/ScreenR
An R package that enables the user to perform High Throughput Biological Screening.
Language: R - Size: 44.6 MB - Last synced: 17 days ago - Pushed: 9 months ago - Stars: 1 - Forks: 1
sauriiiin/sau-matlab-toolkit
Sau's implementation of the MATLAB Colony Analyzer Toolkit and Bean MATLAB Toolkit to analyze high-throughput screening data.
Language: MATLAB - Size: 180 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
sauriiiin/lidetector
LI Detector analytical pipeline for colony-based high-throughput screens.
Language: MATLAB - Size: 82.4 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0
kiranvad/MLCD
Metric Learning for Combinatorial Datasets
Language: MATLAB - Size: 202 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 1