Computational-Plant-Science/3D_model_traits_demo

Computation of root phenes from 3D point clouds.

Language: Python - Size: 70.9 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 5 - Forks: 1

neurogenomics/phenomix

Explore the phenome ✨🎆✨

Language: R - Size: 61.7 MB - Last synced: 14 days ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

phytooracle/automation

Modular, Scalable Phenomic Data Processing Pipelines

Language: Python - Size: 1.84 MB - Last synced: 15 days ago - Pushed: 15 days ago - Stars: 4 - Forks: 4

bschilder/thesis

PhD thesis written in Quarto.

Language: HTML - Size: 605 MB - Last synced: 17 days ago - Pushed: 17 days ago - Stars: 0 - Forks: 0

zjwinn/Phenomic-vs-GP-A-Comparison-of-Prediction-Accuracies-for-GY-in-HWW

This is a public repository for relevant code from the publication of the same name.

Size: 14.9 MB - Last synced: 21 days ago - Pushed: 23 days ago - Stars: 1 - Forks: 0

recursionpharma/maes_microscopy

Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.

Language: Python - Size: 33.2 KB - Last synced: 20 days ago - Pushed: 20 days ago - Stars: 15 - Forks: 4

kiteiru/nsu-diploma-wheat

This is repository of my bachelor degree graduation work. Method was developed in purpose to upgrade accuracy and efficiency of wheat spikelets detection on images.

Language: Jupyter Notebook - Size: 609 MB - Last synced: 28 days ago - Pushed: 28 days ago - Stars: 1 - Forks: 0

Asad-Ismail/SMN

Scaleable multitask Network

Language: Python - Size: 61.5 MB - Last synced: about 1 month ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 0

monarch-initiative/phenol

phenol: Phenotype ontology library

Language: Java - Size: 18.1 MB - Last synced: 16 days ago - Pushed: about 1 month ago - Stars: 21 - Forks: 4

obophenotype/zebrafish-phenotype-ontology-build

:fish: Zebrafish Phenotype Ontology: Build Tools (OBSOLETE)

Language: Java - Size: 32.8 MB - Last synced: about 2 months ago - Pushed: about 6 years ago - Stars: 2 - Forks: 1

GeneDx/phenopy

Phenotype comparison tools using semantic similarity.

Language: Python - Size: 17.9 MB - Last synced: 22 days ago - Pushed: about 1 month ago - Stars: 53 - Forks: 11

kclhi/phenoflow

Standardise and share computable disease definitions

Language: JavaScript - Size: 2.72 MB - Last synced: about 1 month ago - Pushed: 3 months ago - Stars: 7 - Forks: 7

phenopype/phenopype

A phenotyping pipeline for Python

Language: Python - Size: 23.9 MB - Last synced: about 1 month ago - Pushed: about 2 months ago - Stars: 9 - Forks: 4

mukherjeevaskar267/CRISPRi_Screening_AceticAcid

Phenotypic screening of a CRISPRi strain library [Smith et 2017, Mol Syst Biol (2017)13:913] for acetic acid tolerance targeting essential and respiratory essential genes in Saccharomyces cerevisiae

Language: R - Size: 263 MB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

Computational-Plant-Science/plantit

Language: Vue - Size: 73.1 MB - Last synced: about 1 month ago - Pushed: about 1 year ago - Stars: 10 - Forks: 3

cct-datascience/ardn-terra-ref

Code used to generate TERRA REF data in BrAPI format for use by the Agricultural Research Data Network (ARDN) and publication at the USDA National Agriculture Library

Language: R - Size: 16.8 MB - Last synced: 9 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 3

cct-datascience/ardn-genomes-to-fields

Code used to generate Genomes to Fields data in BrAPI format from Imagebreed for use by the Agricultural Research Data Network (ARDN)

Language: R - Size: 8.79 KB - Last synced: 9 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

drseb/HPO-translations

Internationalisation of the HPO content

Size: 11.6 MB - Last synced: 7 months ago - Pushed: about 1 year ago - Stars: 20 - Forks: 12

derekmichaelwright/AGILE_LDP_GWAS_Phenology

Focusing the GWAS Lens on days to flower using latent variable phenotypes derived from global multi-environment trials. The Plant Genome. (2022) e20269.

Language: HTML - Size: 1.39 GB - Last synced: 4 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

drseb/hpo-owl-qc

The QC software for the OWL version of HPO (only text-checks, not so much logic included)

Language: Java - Size: 48.8 KB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 1

Computational-Plant-Science/DIRT-storage

Automatic estimation of storage root length, diameter and volume.

Language: Python - Size: 102 KB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 1 - Forks: 0

sauriiiin/lidetector

LI Detector analytical pipeline for colony-based high-throughput screens.

Language: MATLAB - Size: 82.4 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

CougPhenomics/cougphenomics.github.io

my snippets and notes for compact plants phenomics center at WSU

Size: 2.96 MB - Last synced: 8 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

drseb/HPO-archive

HPO archive of the ontology and annotations

Size: 1.12 GB - Last synced: about 1 year ago - Pushed: about 7 years ago - Stars: 6 - Forks: 2

drseb/phenopposites

Project to generate phenotype opposite_of relationships and investigate the effect on ontology-based algorithms

Size: 19.5 KB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 3 - Forks: 1

drseb/hpo-obo-qc

The QC software for the OBO version of HPO

Language: Java - Size: 35.2 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

terraref/reference-data

Coordination of Data Products and Standards for TERRA reference data

Language: R - Size: 360 KB - Last synced: 29 days ago - Pushed: over 3 years ago - Stars: 9 - Forks: 2

Phenomics/phenomics.github.io

Website for the Phenomics and Machine Learning Team

Language: HTML - Size: 2.97 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 3 - Forks: 5

drseb/hpoweb

HPO web browser created with Vaadin

Language: CSS - Size: 1.02 MB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 1 - Forks: 0