Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: plant-phenotyping
chinazhouzhaoyi/SOM-down-sampling-for-plant-point-clouds
[ISPRS P&RS] Unsupervised shape-aware SOM down-sampling for plant point clouds
Language: Python - Size: 3.57 MB - Last synced: about 24 hours ago - Pushed: 1 day ago - Stars: 5 - Forks: 0
phytooracle/automation
Modular, Scalable Phenomic Data Processing Pipelines
Language: Python - Size: 1.84 MB - Last synced: 15 days ago - Pushed: 15 days ago - Stars: 4 - Forks: 4
Gregor-Mendel-Institute/aradeepopsis
A versatile, fully open-source pipeline to extract phenotypic measurements from plant images
Language: Nextflow - Size: 2.75 MB - Last synced: 15 days ago - Pushed: over 1 year ago - Stars: 40 - Forks: 9
robail-yasrab/RootNav-2.0
Plant Phenotyping APP
Language: Python - Size: 22.9 MB - Last synced: 15 days ago - Pushed: 29 days ago - Stars: 36 - Forks: 18
danforthcenter/plantcv
Plant phenotyping with image analysis
Language: Python - Size: 467 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 612 - Forks: 256
MarniTausen/Greenotyper
Greenotyper is a plant phenotyping tool used for detecting multiple plants on an image and measuring size and greenness of each individual plant over time.
Language: Python - Size: 1.35 GB - Last synced: 7 days ago - Pushed: almost 4 years ago - Stars: 7 - Forks: 2
grimmlab/phenotype_prediction
A comparison of classical and machine learning-based phenotype prediction methods on simulated data and three plant species
Language: Jupyter Notebook - Size: 67.1 MB - Last synced: 12 days ago - Pushed: over 1 year ago - Stars: 2 - Forks: 2
adamavip/nirs-protein-prediction
We present here a 1D convolutional neural network model to predict grain protein content using spectroscopic data of multiple cereals
Language: Jupyter Notebook - Size: 11.6 MB - Last synced: 9 months ago - Pushed: about 2 years ago - Stars: 8 - Forks: 2
BoMeyering/BoMeyering.github.io Fork of volny/creative-theme-jekyll
My Github Portfolio and CV
Language: HTML - Size: 4.47 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0
danforthcenter/phenome2020-workshop
Phenome 2020 Digital Phenotyping workshop materials
Language: Jupyter Notebook - Size: 371 MB - Last synced: about 1 month ago - Pushed: about 4 years ago - Stars: 5 - Forks: 2
kentavv/flir-batch-process
Batch process FLIR radiometric (thermal) JPEGs and generate clean lossless images with consistent scale and palette
Language: Python - Size: 15.3 MB - Last synced: 9 months ago - Pushed: over 2 years ago - Stars: 5 - Forks: 1
csiro-robotics/UPGen
The official repository for the paper: Scalable learning for bridging the species gap in image-based plant phenotyping.
Language: Python - Size: 15 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 23 - Forks: 3
jberry47/ddpsc_phenotypercv
Header-only C++11 library using OpenCV for high-throughput image-based plant phenotyping
Language: C++ - Size: 7 MB - Last synced: 1 day ago - Pushed: about 2 years ago - Stars: 4 - Forks: 0
neemiasbsilva/regression-in-CNNs-applied-to-plant-leaf-count
Regression in Convolutional Neural Network applied to Plant Leaf Count
Language: Jupyter Notebook - Size: 51 MB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 17 - Forks: 7
anguyen216/Deep-Learning-based-Plant-Phenotyping
Detecting phenotypic traits such as leaf and collar count in soybean plants using deep learning
Language: Python - Size: 13.2 MB - Last synced: 10 months ago - Pushed: over 2 years ago - Stars: 2 - Forks: 1
amy-tabb/CASS
Code for taking measurements from images of an object on top of a calibration pattern.
Language: C++ - Size: 103 KB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 7 - Forks: 2
ricber/Plant-Phenotyper
A modular software architecture for Automatic Plant Phenotyping
Language: C++ - Size: 154 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 4 - Forks: 2
amy-tabb/Plantae-seminar-Nov2018
A repository with notes from the seminar given on 28 November 2018.
Size: 58.2 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 3 - Forks: 0
amy-tabb/camera-as-scanner
Code for calibrating a camera using a pattern, exif tags, and then warping to physical dimensions * a scaling factor. Originally for use in plant phenotyping.
Size: 80.2 MB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0