ivanwilliammd/iderare-pheno

IdeRare Phenotype Analysis suite : Convert Indonesia SATUSEHAT terminology (SNOMED-CT, LOINC, ICD-10) to Rare Disease Terminology / Ontology (HPO, OMIM) and find the likelihood differential gene and disease explaining patient phenotype

Language: Jupyter Notebook - Size: 15.1 MB - Last synced: 17 days ago - Pushed: 18 days ago - Stars: 1 - Forks: 0

ivanwilliammd/IDeRare

Indonesia Exome Rare Disease Variant Discovery Pipeline. Phenotype analysis part available on Streamlit and PyPi

Language: Jupyter Notebook - Size: 42.3 MB - Last synced: 18 days ago - Pushed: 18 days ago - Stars: 1 - Forks: 0

superphy/kmer

Using machine learning to predict E. coli phenotypes

Language: TeX - Size: 734 MB - Last synced: about 1 month ago - Pushed: over 4 years ago - Stars: 1 - Forks: 2

grimmlab/easyPheno

easyPheno: a model agnostic phenotype prediction framework

Language: Python - Size: 25.9 MB - Last synced: 9 days ago - Pushed: 7 months ago - Stars: 10 - Forks: 5

transbioZI/BioMM

BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data

Language: HTML - Size: 12.2 MB - Last synced: 27 days ago - Pushed: over 1 year ago - Stars: 14 - Forks: 1

univieCUBE/phenotrex Fork of LokiLuciferase/phenotrex

Microbial Phenotype Prediction, successor to PICA, implemented with Python 3.7 and scikit-learn

Language: Python - Size: 28.3 MB - Last synced: 7 days ago - Pushed: over 2 years ago - Stars: 8 - Forks: 4

grimmlab/phenotype_prediction

A comparison of classical and machine learning-based phenotype prediction methods on simulated data and three plant species

Language: Jupyter Notebook - Size: 67.1 MB - Last synced: 9 days ago - Pushed: over 1 year ago - Stars: 2 - Forks: 2

foundation29org/RareCrowds

Package to serve public and freely-available data from rare disease patients.

Language: Python - Size: 24.6 MB - Last synced: 20 days ago - Pushed: over 2 years ago - Stars: 7 - Forks: 6

samanta-anupam/pheno-predictor

Comp Bio fall 2017 project

Language: Jupyter Notebook - Size: 69 MB - Last synced: 10 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

pyubero/quantitative_mutations

A class based on COBRApy to handle quantitative mutations on metabolic models.

Language: Jupyter Notebook - Size: 1.18 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

niekverw/ukpheno

Create binary traits for UKbio using ICD/OPER/medication/self reports/age of diagnosis/visit-dates etc). The current output includes variables on history, study visit, future, time-to-first-event, episode-duration. this is a starting point to construct your favorite trait in ukb. The code was written on the go, so not super clean code..

Language: R - Size: 64.7 MB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 3 - Forks: 3

robail-yasrab/RSML-to-Image

Language: Python - Size: 6.84 KB - Last synced: 13 days ago - Pushed: almost 4 years ago - Stars: 2 - Forks: 0

gomezlab/kinotypeClusteringAndRegression

Joint Repository of GR Metrics Regression and Kinase Interaction Network (KIN) Clustering

Language: Jupyter Notebook - Size: 236 MB - Last synced: about 2 months ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0