Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: common-workflow-language
DataBiosphere/toil
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
Language: Python - Size: 32.9 MB - Last synced: about 1 hour ago - Pushed: 3 days ago - Stars: 873 - Forks: 237
crim-ca/weaver
Weaver: Workflow Execution Management Service (EMS); Application, Deployment and Execution Service (ADES); OGC API - Processes; WPS; CWL Application Package
Language: Python - Size: 95.3 MB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 22 - Forks: 5
common-workflow-language/cwlviewer
A web application to view and share Common Workflow Language workflows
Language: Java - Size: 10.1 MB - Last synced: 3 days ago - Pushed: 4 days ago - Stars: 40 - Forks: 27
workflux/workflUX
An open-source, cloud-ready web application for simplified deployment of big data workflows.
Language: JavaScript - Size: 7.72 MB - Last synced: 1 day ago - Pushed: 4 days ago - Stars: 32 - Forks: 8
common-workflow-language/user_guide
The CWL v1.0 - v1.2 user guide
Language: Common Workflow Language - Size: 17.8 MB - Last synced: 5 days ago - Pushed: 5 days ago - Stars: 39 - Forks: 64
common-workflow-language/cwltool
Common Workflow Language reference implementation
Language: Python - Size: 11.1 MB - Last synced: 4 days ago - Pushed: 5 days ago - Stars: 321 - Forks: 224
common-workflow-language/common-workflow-language
Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
Language: Common Workflow Language - Size: 3.63 MB - Last synced: 4 days ago - Pushed: 6 months ago - Stars: 1,442 - Forks: 199
rabix/cwl-ts
Typescript data model for Common Workflow Language
Language: TypeScript - Size: 2.49 MB - Last synced: 8 days ago - Pushed: about 1 year ago - Stars: 49 - Forks: 19
common-workflow-language/cwl-utils
Python utilities for CWL
Language: Python - Size: 1.27 MB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 31 - Forks: 17
Barski-lab/cwl-airflow
Python package to extend Airflow functionality with CWL1.1 support
Language: Python - Size: 2.77 MB - Last synced: 23 days ago - Pushed: 7 months ago - Stars: 181 - Forks: 34
Terradue/pycalrissian
Python client for Calrissian - CWL on kubernetes
Language: Python - Size: 547 KB - Last synced: 27 days ago - Pushed: 6 months ago - Stars: 2 - Forks: 1
stain/cwlprov-paper-gigascience
CWLProv paper submitted for GigaScience
Language: TeX - Size: 7.71 MB - Last synced: 27 days ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0
common-workflow-language/cwltest
Framework for testing CWL tools and workflows
Language: Python - Size: 440 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 17 - Forks: 17
EBI-Metagenomics/pipeline-v5
This repository contains all CWL descriptions of the MGnify pipeline version 5.0.
Language: HTML - Size: 376 MB - Last synced: 28 days ago - Pushed: 9 months ago - Stars: 20 - Forks: 18
sbg/sevenbridges-python
SevenBridges Python Api bindings
Language: Python - Size: 1.97 MB - Last synced: 23 days ago - Pushed: about 2 months ago - Stars: 45 - Forks: 27
rabix/benten
A language server for Common Workflow Language
Language: Python - Size: 5.06 MB - Last synced: 15 days ago - Pushed: 5 months ago - Stars: 66 - Forks: 10
rabix/composer
Visual and code editor for Common Workflow Language
Language: TypeScript - Size: 13.3 MB - Last synced: 8 days ago - Pushed: over 1 year ago - Stars: 298 - Forks: 74
kclhi/phenoflow
Standardise and share computable disease definitions
Language: JavaScript - Size: 2.72 MB - Last synced: 25 days ago - Pushed: 2 months ago - Stars: 7 - Forks: 7
rabix/bunny
[Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0
Language: Common Workflow Language - Size: 5.75 MB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 74 - Forks: 28
nikolapeja6/gi-proj-CNNScoreVariants
School project for the Computational Genomics (2018/2019) course, which is a part of the Master studies at the School of Electrical Engineering, University of Belgrade.
Language: Common Workflow Language - Size: 273 KB - Last synced: 7 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0
common-workflow-language/cwl-website
www.commonwl.org
Language: JavaScript - Size: 13.4 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 11 - Forks: 20
common-workflow-lab/cwl-language-server
A Language Server for CWL
Language: Python - Size: 35.2 KB - Last synced: 8 months ago - Pushed: almost 2 years ago - Stars: 3 - Forks: 2
common-workflow-lab/ipython2cwl
IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.
Language: Python - Size: 329 KB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 15 - Forks: 5
sbg/bco-app
BCO App by Seven Bridges
Language: R - Size: 58.7 MB - Last synced: 6 months ago - Pushed: 10 months ago - Stars: 5 - Forks: 4
tom-tan/flycheck-cwl
Add on-the-fly checker for Common Workflow Language
Language: Emacs Lisp - Size: 3.91 KB - Last synced: 10 months ago - Pushed: over 6 years ago - Stars: 1 - Forks: 0
tom-tan/drill-hawk
A visualizer of workflow execution records for CWL
Language: HTML - Size: 10.5 MB - Last synced: 10 months ago - Pushed: about 3 years ago - Stars: 3 - Forks: 0
tom-tan/ep3
A workflow engine for CWL which aims to have a pluggable architecture
Language: Ruby - Size: 386 KB - Last synced: 10 months ago - Pushed: about 2 years ago - Stars: 9 - Forks: 3
tom-tan/cwl-mode
CWL mode for Emacs
Language: Emacs Lisp - Size: 22.5 KB - Last synced: 10 months ago - Pushed: about 3 years ago - Stars: 7 - Forks: 1
tom-tan/cwl-inspector
This tool provides a handy way to inspect properties of tools or workflows written in Common Workflow Language
Language: Ruby - Size: 364 KB - Last synced: 10 months ago - Pushed: over 2 years ago - Stars: 7 - Forks: 1
tom-tan/cwl-conformance-test-summarizer
Summarize the result of conformance test using cwltest
Language: Ruby - Size: 6.84 KB - Last synced: 10 months ago - Pushed: almost 6 years ago - Stars: 3 - Forks: 0
tom-tan/cwl-for-remote-container-template
A template to write CWL documents with VSCode with remote container extension
Language: Dockerfile - Size: 46.9 KB - Last synced: 10 months ago - Pushed: about 1 year ago - Stars: 7 - Forks: 3
PMCC-BioinformaticsCore/janis
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
Language: Python - Size: 16 MB - Last synced: about 1 hour ago - Pushed: 8 months ago - Stars: 39 - Forks: 13
otiai10/yacle
Yet Another CWL Engine by Golang
Language: Go - Size: 87.9 KB - Last synced: 11 days ago - Pushed: about 5 years ago - Stars: 18 - Forks: 3
onnovalkering/cwl-rs
The Common Workflow Language (CWL) object model for Rust.
Language: Common Workflow Language - Size: 53.7 KB - Last synced: 4 days ago - Pushed: over 2 years ago - Stars: 4 - Forks: 1
sbg/tidycwl
Tidy Common Workflow Language Tools and Workflows
Language: Common Workflow Language - Size: 938 KB - Last synced: 6 months ago - Pushed: over 1 year ago - Stars: 8 - Forks: 1
sbg/sevenbridges-cwl
Seven Bridges Python library for programatic generation of CWL workflows.
Language: Python - Size: 1.3 MB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 19 - Forks: 3
msk-access/cwl_subworkflows
A list of subworkflows used for MSK-ACCESS data processing.
Language: Common Workflow Language - Size: 907 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 2 - Forks: 1
sbg/sevenbridges-r
Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R
Language: R - Size: 3.41 MB - Last synced: 6 months ago - Pushed: over 2 years ago - Stars: 33 - Forks: 14
rabix/cwl-format
A very opinionated code formatter for CWL
Language: Common Workflow Language - Size: 202 KB - Last synced: 23 days ago - Pushed: 5 months ago - Stars: 9 - Forks: 4
giannisdoukas/ipython2cwl-demo
IPython2CWL Demo
Language: Jupyter Notebook - Size: 116 KB - Last synced: 14 days ago - Pushed: almost 4 years ago - Stars: 2 - Forks: 0
giannisdoukas/CWLJNIKernel
Jupyter Notebook Kernel for Common Workflow Language
Language: Python - Size: 1.67 MB - Last synced: 28 days ago - Pushed: over 2 years ago - Stars: 4 - Forks: 4
tom-tan/core-wire
A tool/library to make CWL engines connected to remote resources
Language: D - Size: 107 KB - Last synced: 10 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0
tom-tan/zatsu-cwl-generator
Simple CWL document generator from given execution commands
Language: D - Size: 119 KB - Last synced: 8 months ago - Pushed: over 1 year ago - Stars: 4 - Forks: 0
msk-access/cwl-commandlinetools Fork of mskcc/cwl-commandlinetools
Central location for CWL CommandLineTools
Language: Common Workflow Language - Size: 1.1 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 4 - Forks: 0
otiai10/cwl.go
CWL (and input file) parser for Golang, used by github.com/otiai10/yacle
Language: Go - Size: 582 KB - Last synced: 11 days ago - Pushed: about 5 years ago - Stars: 21 - Forks: 7
common-workflow-lab/upload-conformance-badges
Action for uploading CWL conformance badges
Size: 26.4 KB - Last synced: 14 days ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0
common-workflow-lab/run-conformance-tests
Action for running CWL conformance tests
Size: 29.3 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0
common-workflow-lab/run-tests
Action for running tests for CWL workflows
Size: 21.5 KB - Last synced: 13 days ago - Pushed: about 1 month ago - Stars: 1 - Forks: 0
tom-tan/conformance
Location to store the results of CWL conformance testing for ep3
Size: 242 KB - Last synced: 30 days ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0
suecharo/cwl-inputs-parser
A library for parsing the inputs field of Common Workflow Language (CWL) document.
Language: Common Workflow Language - Size: 632 KB - Last synced: 25 days ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0
suecharo/genpei
An implementation of GA4GH Workflow Execution Service Standard as a microservice.
Language: Python - Size: 3.65 MB - Last synced: 26 days ago - Pushed: almost 4 years ago - Stars: 8 - Forks: 1
suecharo/agodashi
An API server for parsing workflows written in workflow languages.
Language: Python - Size: 63.5 KB - Last synced: 8 days ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0
ktaletsk/cwl-examples
Language: Common Workflow Language - Size: 6.84 KB - Last synced: about 1 month ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0
nanxstats/sbpack-r
An R package to pack and upload CWL apps to Seven Bridges powered platforms
Language: R - Size: 48.8 KB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 1 - Forks: 0
nanxstats/cwl-exploder
Shiny app to unpack monolithic CWL workflows
Language: R - Size: 1.07 MB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0
nanxstats/cwl-upgrader
Shiny app to upgrade Common Workflow Language (CWL) apps from sbg:draft2 to v1.0
Language: R - Size: 1.47 MB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0
nanxstats/cwl-formatter
Shiny app to format Common Workflow Language (CWL) apps
Language: R - Size: 1.04 MB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 1 - Forks: 0
EBI-Metagenomics/workflow-is-cwl
This repository contains CWL descriptions of the various tools which will allow you to build workflows for the annotation of transcripts
Language: HTML - Size: 30.6 MB - Last synced: 28 days ago - Pushed: almost 4 years ago - Stars: 6 - Forks: 7
suzuki-shm/fastANI-in-cwl
Wrapper tool of fastANI by CWL and Docker
Language: Common Workflow Language - Size: 1.1 MB - Last synced: 26 days ago - Pushed: almost 5 years ago - Stars: 1 - Forks: 0
andrewjesaitis/cwl-tutorial
Tutorial for the Common Workflow Language using SnpEff
Language: Common Workflow Language - Size: 50.8 KB - Last synced: 29 days ago - Pushed: over 5 years ago - Stars: 4 - Forks: 3
wtsi-hgi/cwl-dummy
Generates CWL files that do nothing.
Language: Python - Size: 57.6 KB - Last synced: 28 days ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0