Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: scientific-workflows

Repositories

steep-wms/steep

⤴️ Steep Workflow Management System – Run scientific workflows in the Cloud

Language: Kotlin - Size: 11.9 MB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 36 - Forks: 5

GEUS-Glaciology-and-Climate/freshwater

Greenland liquid water runoff from 1958 through 2019

Language: TeX - Size: 1020 KB - Last synced: about 14 hours ago - Pushed: 6 months ago - Stars: 14 - Forks: 7

wfcommons/WfFormat

The WfCommons JSON Schema for workflow instances and generators

Language: Python - Size: 66.4 KB - Last synced: 13 days ago - Pushed: 14 days ago - Stars: 5 - Forks: 4

Spinmob/spinmob

Rapid and flexible acquisition, analysis, fitting, and plotting in Python. Designed for scientific laboratories.

Language: Python - Size: 4.56 MB - Last synced: 15 days ago - Pushed: 4 months ago - Stars: 36 - Forks: 12

scipipe/scipipe

Robust, flexible and resource-efficient pipelines using Go and the commandline

Language: Go - Size: 1.05 MB - Last synced: 11 days ago - Pushed: 10 months ago - Stars: 1,053 - Forks: 72

wrench-project/wrench

WRENCH: Cyberinfrastructure Simulation Workbench

Language: C++ - Size: 496 MB - Last synced: 15 days ago - Pushed: 16 days ago - Stars: 32 - Forks: 18

kantale/arkalos

An Open Science Collaborative system

Language: JavaScript - Size: 147 KB - Last synced: 22 days ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

djorlando24/pySciCam

Read images from high speed and scientific cameras in Python

Language: C - Size: 159 MB - Last synced: 23 days ago - Pushed: 23 days ago - Stars: 5 - Forks: 5

showyourwork/showyourwork

A workflow for reproducible and open scientific articles

Language: TeX - Size: 13.7 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 531 - Forks: 43

JunoLab/Weave.jl

Scientific reports/literate programming for Julia

Language: Julia - Size: 10.3 MB - Last synced: 25 days ago - Pushed: about 1 month ago - Stars: 814 - Forks: 95

pytask-dev/pytask

pytask is a workflow management system that facilitates reproducible data analyses.

Language: Python - Size: 2.58 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 101 - Forks: 10

marijanbeg/2021-paper-jupyter-reproducible-workflows

Using Jupyter for reproducible scientific workflows

Language: Jupyter Notebook - Size: 226 KB - Last synced: about 1 month ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

stain/cwlprov-paper-gigascience

CWLProv paper submitted for GigaScience

Language: TeX - Size: 7.71 MB - Last synced: about 1 month ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

TheRoddyWMS/Roddy

The Roddy workflow development and management system.

Language: Groovy - Size: 302 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 8 - Forks: 3

wfcommons/WfCommons

WfCommons: A Framework for Enabling Scientific Workflow Research and Development

Language: Python - Size: 186 MB - Last synced: 16 days ago - Pushed: about 1 month ago - Stars: 28 - Forks: 9

Florian-Katerndahl/TreeSITS-k8s

Tree Species Classification Run Within a kubernetes Cluster

Language: Dockerfile - Size: 62.5 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 1 - Forks: 0

kaust-vislab/r-data-science-project

Template repository for an R and RStudio based data science project.

Language: Dockerfile - Size: 3.91 KB - Last synced: about 2 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

kaust-vislab/fastai-gpu-data-science-project

Template repository for a Python 3-based (data) science project with GPU acceleration using the Fast.ai ecosystem.

Language: Dockerfile - Size: 78.1 KB - Last synced: about 2 months ago - Pushed: over 4 years ago - Stars: 2 - Forks: 1

petzi53/weblog-portfolio

Weblog (academic theme) outdated - New = WEBLOG-NOTES

Language: JavaScript - Size: 167 MB - Last synced: 2 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 1

SCM-NV/nano-qmflows

Package containing several workflows to compute molecular properties for nanomaterials

Language: Python - Size: 41.7 MB - Last synced: 23 days ago - Pushed: 23 days ago - Stars: 9 - Forks: 10

pharmbio/sciluigi

A light-weight wrapper library around Spotify's Luigi workflow library to make writing scientific workflows more fluent, flexible and modular

Language: Python - Size: 221 KB - Last synced: 27 days ago - Pushed: over 1 year ago - Stars: 331 - Forks: 57

jpcartailler/core-informatics-utilities

Utility scripts and odd bits to facilitate with tasks related to Core Informatics LIMS system

Language: Python - Size: 143 KB - Last synced: 3 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

ORNL/flowcept Fork of renan-souza/flowcept

Runtime data integration system that empowers any data processing system to capture and query workflow provenance using data observability.

Language: Python - Size: 53.1 MB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 1 - Forks: 2

nlesc-nano/CAT

A collection of tools designed for the automatic construction, and subsequent analysis, of chemical compounds.

Language: Python - Size: 24.5 MB - Last synced: 3 days ago - Pushed: 3 months ago - Stars: 16 - Forks: 2

Python package for dictionary-based, multi-dimensional parameter space definition and iteration, which can be conveniently defined using YAML — NOTE: This repo is MIRRORED! The development project and issue tracker can be found here:

Language: Python - Size: 858 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

CIDARLAB/fpSelection

Algorithms for the selection of fluorescent reporters.

Language: Java - Size: 101 MB - Last synced: 4 months ago - Pushed: almost 2 years ago - Stars: 5 - Forks: 3

Kepler-Project/web-view

Kepler WebView

Language: JavaScript - Size: 1.23 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 2 - Forks: 0

pegasus-isi/1000genome-workflow

Bioinformatics workflow that identifies mutational overlaps using data from the 1000 genomes project

Language: Jupyter Notebook - Size: 499 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 7 - Forks: 8

wrench-project/wrench-python-api

WRENCH's Python API

Language: Python - Size: 351 KB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 1 - Forks: 0

PedroOliveiraFernandes/WorkflowModelForDistributedProcessing

Workflow-Based Model for Parallel and Distributed Processing. Prototype and use-cases.

Language: Java - Size: 3.53 MB - Last synced: 4 months ago - Pushed: 5 months ago - Stars: 1 - Forks: 0

kyrylo-gr/dh5

Dictionary H5 — package that enables the seamless manipulation of HDF5 files, treating them like traditional dictionaries.

Language: Python - Size: 882 KB - Last synced: 8 days ago - Pushed: about 1 month ago - Stars: 1 - Forks: 0

openalea/core

Core functionality of openalea

Language: Python - Size: 1.77 MB - Last synced: 23 days ago - Pushed: about 2 months ago - Stars: 3 - Forks: 9

tferr/Scripts

:microscope::cocktail: Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ

Language: Java - Size: 9.49 MB - Last synced: 7 months ago - Pushed: almost 2 years ago - Stars: 23 - Forks: 18

robinweide/tagmeppr

A computational pipeline to map tagmap-insertions

Language: R - Size: 4.41 MB - Last synced: 9 months ago - Pushed: about 4 years ago - Stars: 2 - Forks: 1

magnus-lycka/anoxl

Language: Python - Size: 115 KB - Last synced: 9 months ago - Pushed: over 7 years ago - Stars: 0 - Forks: 0

openalea/visualea

Visual Programming Workflow environment for OpenAlea

Language: Python - Size: 1.99 MB - Last synced: 23 days ago - Pushed: 4 months ago - Stars: 3 - Forks: 4

SCM-NV/qmflows

This library tackles the construction and efficient execution of computational chemistry workflows

Language: Python - Size: 34 MB - Last synced: 6 days ago - Pushed: 4 months ago - Stars: 44 - Forks: 9

JunCEEE/newProject

A script to create new scientific project directory

Language: Shell - Size: 4.88 KB - Last synced: 12 months ago - Pushed: 12 months ago - Stars: 0 - Forks: 0

bentsherman/tesseract

A tool for creating resource prediction models for scientific workflows

Language: Jupyter Notebook - Size: 1.64 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 7 - Forks: 1

lucasaugustomcc/tacc-workflows

Workflows created on WINGS workflow system for the Hydrology domain

Language: Visual Basic - Size: 110 MB - Last synced: 4 months ago - Pushed: about 6 years ago - Stars: 3 - Forks: 0

jaidevd/kepler 📦

Smart journal for ML experiments.

Language: Python - Size: 151 KB - Last synced: 20 days ago - Pushed: about 1 year ago - Stars: 7 - Forks: 1

KAUST-Academy/python-data-science-project

Template repository for a Python 3-based (data) science project

Language: Dockerfile - Size: 98.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 67 - Forks: 17

nicodds/rpistudio

A set of scripts/modules to control scientific experiments using the Raspberry PI

Language: Python - Size: 52.7 KB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 1 - Forks: 0

KAUST-Academy/pytorch-gpu-data-science-project

Template repository for a Python 3-based (data) science project with GPU acceleration using the PyTorch ecosystem.

Language: Python - Size: 186 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 17 - Forks: 7

amacfie/ci_pandoc_test 📦

Pandoc + GitHub pages example

Language: JavaScript - Size: 111 KB - Last synced: about 1 month ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

Related Keywords

scientific-workflows 66 scientific-computing 17 workflow 11 reproducible-research 9 python 9 data-science 9 template-project 9 scientific-research 9 python-3 7 science 7 gpu 5 gpu-acceleration 5 simulation 5 scheduling-simulator 5 simulation-framework 4 simulation-modeling 4 science-research 4 bioinformatics 4 hpc 4 distributed-systems 4 deep-learning 4 workflow-engine 4 pipeline 3 workflow-management-system 3 workflow-simulator 3 machine-learning 3 chemistry 3 workflow-execution-traces 3 traces 3 provenance 3 dag 3 wfcommons 3 scientific-visualization 3 mathematics 2 paper 2 wrench 2 physics 2 reproducibility 2 analysis 2 materials 2 pytorch 2 escience 2 openalea 2 reproducible-science 2 tensorflow 2 scikit-learn 2 wings-workflows 2 education 2 nextflow 2 batch-job 2 distributed-computing 2 quantum-mechanics 2 workflows 2 automation 2 pegasus-wms 2 scientific 2 cloud-computing 2 scientific-papers 1 excel 1 microscopy 1 selection-algorithms 1 ruby 1 fluorescence 1 sequence-alignment 1 cytometry 1 scripts-collection 1 publish-subscribe 1 virtual-machines 1 distributed-processing 1 containers 1 api 1 1000genomes 1 kepler 1 data-storage 1 webapp 1 data-structure 1 h5py 1 component 1 beanshell 1 clojure 1 groovy 1 ijm 1 image-analysis 1 imagej 1 imagej2 1 java 1 jython 1 tkinter 1 git 1 programming 1 rstats 1 social-sciences 1 reproducible-experiments 1 template 1 data-analysis 1 django 1 django-application 1 django-rest-framework 1 pipeline-db 1 data-flow 1

GitHub topics: scientific-workflows

ORNL/flowcept Fork of renan-souza/flowcept

jaidevd/kepler 📦

amacfie/ci_pandoc_test 📦

ZviBaratz/django_analyses Fork of TheLabbingProject/django_analyses