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GitHub / DataBiosphere / toil
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DataBiosphere%2Ftoil
Stars: 870
Forks: 238
Open Issues: 393
License: apache-2.0
Language: Python
Repo Size: 33 MB
Dependencies:
80
Created: about 9 years ago
Updated: 1 day ago
Last pushed: 1 day ago
Last synced: 1 day ago
Commit Stats
Commits: 4745
Authors: 146
Mean commits per author: 32.5
Development Distribution Score: 0.85
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/DataBiosphere/toil
Topics: aws, common-workflow-language, cwl, gridengine, kubernetes, mesos, pipeline, python, slurm, wdl, workflow, workflow-description-language
Files
Dependencies
- actions/checkout v2 composite
- github/codeql-action/analyze v1 composite
- github/codeql-action/autobuild v1 composite
- github/codeql-action/init v1 composite
- rancavil/slurm-master 19.05.5-1
- rancavil/slurm-node 19.05.5-1
- quay.io/vgteam/dind latest build
- grafana/grafana latest build
- jinnlynn/mtail latest build
- prom/prometheus v2.24.1 build
- ${TOIL_APPLIANCE_SELF} latest
- rabbitmq 3.9.5
- traefik v2.2
- boto >=2.48.0,<3
- boto3 >=1.20.46,<2
- boto3-stubs ==1.24.0
- mypy-boto3-iam ==1.24.90
- mypy-boto3-s3 ==1.24.94
- mypy-boto3-sdb ==1.24.0
- mypy-boto3-sts ==1.26.0.post1
- CacheControl *
- cwltool ==3.1.20221008225030
- galaxy-tool-util *
- networkx >=2,<2.8.9
- ruamel.yaml >=0.15,<=0.17.21
- ruamel.yaml.clib >=0.2.6
- schema-salad >=8.3.20220913105718,<8.4
- autoflake * development
- black * development
- cwltest >=2.2.20211116163652 development
- diff_cover * development
- docutils >=0.16,<0.18 development
- flake8 >=3.8.4,<7 development
- flake8-bugbear >=20.11.1,<21 development
- isort * development
- lxml * development
- mock >=4.0.3,<5 development
- mypy ==0.982 development
- pydocstyle * development
- pytest >=6.2.1,<8 development
- pytest-cov >=2.12.1,<5 development
- pytest-timeout >=1.4.2,<3 development
- pyupgrade * development
- setuptools >=51.3.3,<63 development
- sphinx >=4,<6 development
- stubserver >=1.1,<2 development
- types-boto * development
- types-pytz * development
- types-requests * development
- types-setuptools * development
- pynacl >=1.4.0,<2
- apache-libcloud >=2.2.1,<3
- google-cloud-storage >=2,<=2.5.0
- htcondor >=8.6.0,<9
- idna >=2
- kubernetes >=12.0.1,<22
- kubernetes-stubs ==v22.6.0post1
- types-PyYAML *
- types-urllib3 *
- pymesos >=0.3.15,<0.4
- celery >=5.1.0,<6
- connexion >=2.10.0,<3
- flask >=2.0,<3
- flask-cors ==3.0.10
- gunicorn ==20.1.0
- ruamel.yaml >=0.15,<0.17.22
- werkzeug >=2.0,<3
- wes-service >=4.0.0,<5
- wdlparse ==0.1.0