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GitHub / sigven / oncoEnrichR
Cancer-dedicated gene set interpretation
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sigven%2FoncoEnrichR
Stars: 48
Forks: 10
Open Issues: 2
License: mit
Language: R
Repo Size: 1.9 GB
Dependencies:
32
Created: over 4 years ago
Updated: 8 months ago
Last pushed: 9 months ago
Last synced: 7 months ago
Topics: cancer, cancer-hallmark-evidence, cancer-survival, co-expression, crispr-target, disease-gene-association, functional-enrichment-analysis, genesets, high-throughput-screening, pathway-enrichment-analysis, prioritization, protein-complexes, protein-protein-interaction, proteins, report-generator, tcga-data, tissue-enrichment-analysis
Files
Dependencies
- GSEABase >= 1.54.0 depends
- R >= 4.1 depends
- DT >= 0.18 imports
- R.cache * imports
- RCurl * imports
- SummarizedExperiment >= 1.22.0 imports
- TissueEnrich * imports
- assertable * imports
- assertthat * imports
- clusterProfiler * imports
- dplyr * imports
- gganatogram * imports
- ggpubr >= 0.4.0 imports
- igraph >= 1.2.6 imports
- jsonlite * imports
- log4r >= 0.4.1 imports
- maftools >= 2.8.0 imports
- magrittr >= 2.0.1 imports
- openxlsx * imports
- org.Hs.eg.db * imports
- pals >= 1.7 imports
- plotly * imports
- reshape2 >= 1.4.4 imports
- rlang * imports
- rmarkdown * imports
- stringi * imports
- stringr * imports
- textclean >= 0.9.3 imports
- tidyr * imports
- visNetwork >= 2.0.9 imports
- zen4R * imports
- testthat >= 3.1.0 suggests