GitHub topics: co-expression

Repositories

eead-csic-compbio/coexpression_motif_discovery

Discovering cis-regulatory motifs in proximal promoters of plants in RSAT::Plants

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MengqianHuang/MIXER Fork of ToryDeng/LEGEND

MIXER: An integrative algorithm for identifying co-expressed and cofunctional genes in multimodal transcriptomic sequencing data

Language: Python - Size: 142 MB - Last synced at: 9 days ago - Pushed at: 22 days ago - Stars: 0 - Forks: 0

mykmal/cowas

Association testing for genetically regulated co-expression.

Language: R - Size: 258 KB - Last synced at: 23 days ago - Pushed at: 23 days ago - Stars: 4 - Forks: 0

sigven/oncoEnrichR

Explore the cancer relevance of your gene list

Language: R - Size: 1.9 GB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 49 - Forks: 10

mikelkou/fava

Functional Associations using Variational Autoencoders

Language: Jupyter Notebook - Size: 176 MB - Last synced at: 6 days ago - Pushed at: 3 months ago - Stars: 39 - Forks: 3

gandallab/C4A-network

Code accompanying the manuscript "Brain gene co-expression networks link complement signaling with convergent synaptic pathology in schizophrenia"

Language: R - Size: 38 MB - Last synced at: 2 days ago - Pushed at: 4 months ago - Stars: 4 - Forks: 1

lingfeiwang/normalisr

Causal inference, differential expression, and co-expression for scRNA-seq

Language: Python - Size: 24.5 MB - Last synced at: 4 days ago - Pushed at: over 3 years ago - Stars: 18 - Forks: 3

Mahsa-Ehsanifard/WGCNA

Weighted Gene Co-expression Network Analysis;

Language: R - Size: 10.3 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 1 - Forks: 0

oubounyt/SCANet

SCANet is a python package that incorporates the inference of gene co-expression networks from single-cell gene expression data

Language: Python - Size: 9.63 MB - Last synced at: 20 days ago - Pushed at: about 2 years ago - Stars: 4 - Forks: 0

ConorGilesDoran/MSc_Thesis_Transcriptomics

Repository for all R scripts and results associated with my research dissertation for the MSc Bioinformatics and Computational Biology degree in University College Cork, 2022.

Language: R - Size: 153 MB - Last synced at: 10 months ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

ToryDeng/LEGEND

LEGEND: An integrative algorithm for identifying co-expressed and cofunctional genes in multimodal transcriptomic sequencing data

Language: Python - Size: 135 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

saysayani11/miRNA-RAB-network-analysis-in-human-diseases

Masters' thesis: Construction & analysis of miRNA-RAB sub-networks in human RAB associated disorders- A network biology approach

Size: 40.3 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

Kumquatum/GWENA

Gene Co-expression Network analysis pipeline

Language: R - Size: 10.1 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 19 - Forks: 3

Vivianstats/scLink

Inferring gene co-expression networks from single cell gene expression data

Language: R - Size: 4.46 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 21 - Forks: 7

SoniaRuiz/coexp-website

CoExp website is a web-based tool developed in .NET Core Framework, for querying 109 independent gene co-expression networks from the family of CoExp R packages.

Language: JavaScript - Size: 51.6 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 6 - Forks: 1

huangzhii/SALMON

SALMON: Survival Analysis Learning with Multi-Omics Neural Networks

Language: Python - Size: 127 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 60 - Forks: 21

Ala-Eddine-BOUDEMIA/Chromatin-Dynamics

Integrated Analysis of Co-expression Patterns of Histone Variants and their Chaperones Across Tissues from Publicly Available RNA-Seq Data

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ilwookkim/cgNetwork

Gene co-expression network analysis

Language: R - Size: 2.7 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

chemoelectric/objecticon

Object Icon, beginning from a migration to Git of the Subversion at https://sourceforge.net/p/objecticon/code/ For the original, use branch objecticon-last-svn-commit

Language: C - Size: 175 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

nat2bee/Ctuberosus

Data repository of the manuscript: Transcriptomic profiling of castes and of sexually and parthenogenetically produced reproductive females in the termite Cavitermes tuberosus

Language: R - Size: 36.7 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0