qplevier/geneset-visualisation-pipeline

Language: Java - Size: 234 MB - Last synced: 4 days ago - Pushed: 17 days ago - Stars: 0 - Forks: 0

plotly/dash-cytoscape

Interactive network visualization in Python and Dash, powered by Cytoscape.js

Language: Python - Size: 68.5 MB - Last synced: 5 days ago - Pushed: 6 days ago - Stars: 577 - Forks: 122

bioinfodlsu/rice-pilaf

In Press, GigaScience. Web app for post-GWAS/QTL analysis that performs a slew of novel bioinformatics analyses to cross-reference GWAS/QTL mapping results with a host of publicly available rice databases

Language: Python - Size: 13 MB - Last synced: 6 days ago - Pushed: 7 days ago - Stars: 1 - Forks: 1

La-Lojban/parser

Lojban parser with some slick visual representation

Language: JavaScript - Size: 29.8 MB - Last synced: 14 days ago - Pushed: 14 days ago - Stars: 1 - Forks: 0

cytoscape/py4cytoscape

Python library for calling Cytoscape Automation via CyREST

Language: Python - Size: 29.3 MB - Last synced: 16 days ago - Pushed: 16 days ago - Stars: 60 - Forks: 13

duo-labs/cloudmapper

CloudMapper helps you analyze your Amazon Web Services (AWS) environments.

Language: JavaScript - Size: 10.4 MB - Last synced: 16 days ago - Pushed: about 2 months ago - Stars: 5,849 - Forks: 790

cytoscape/ipycytoscape

A Cytoscape Jupyter widget

Language: Python - Size: 2.75 MB - Last synced: 19 days ago - Pushed: about 2 months ago - Stars: 259 - Forks: 63

9von10/ngx-cytoscapejs

Angular 13+ Cytoscape.js Wrapper

Language: TypeScript - Size: 2.2 MB - Last synced: 23 days ago - Pushed: 23 days ago - Stars: 14 - Forks: 5

BaderLab/EnrichmentMapApp

The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.

Language: Java - Size: 108 MB - Last synced: 26 days ago - Pushed: 26 days ago - Stars: 31 - Forks: 12

BaderLab/AutoAnnotateApp

The AutoAnnotate Cytoscape App finds clusters of nodes and visually annotates them with semantic labels and groups.

Language: Java - Size: 21.8 MB - Last synced: 24 days ago - Pushed: 26 days ago - Stars: 6 - Forks: 1

maeslopezortiz/Gene-co-expression-network-analysis

Co-expression networks for gene correlation analysis.

Language: R - Size: 12.1 MB - Last synced: 28 days ago - Pushed: 28 days ago - Stars: 0 - Forks: 0

chatox/networks-science-course

A course on Network Science, including network formation models, structural patterns, and dynamic processes.

Language: Jupyter Notebook - Size: 712 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 70 - Forks: 54

weso/rdfshape-client

Web client for RDFShape API with human-friendly validations and visualizations.

Language: JavaScript - Size: 8.66 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 8 - Forks: 4

hadijahkyampeire/cytoscape-graph

This show the implementation of cytoscape graph in a react app.

Language: JavaScript - Size: 652 KB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

olsonjeffery/xresearch

XPiratez Research Tree Viewer

Language: JavaScript - Size: 7.29 MB - Last synced: about 1 month ago - Pushed: over 6 years ago - Stars: 2 - Forks: 0

finnor/wk-shell-decomposition

A Cytoscape app to perform weighted k-shell decomposition

Language: Java - Size: 46.9 KB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 0 - Forks: 1

corwur/cytoscapeneo4j

Cytoscape plugin for neo4j

Language: Java - Size: 282 KB - Last synced: 13 days ago - Pushed: about 2 years ago - Stars: 21 - Forks: 7

smith-chem-wisc/ProteoformSuite

Construction, quantification, and visualization of proteoform families

Language: C# - Size: 512 MB - Last synced: 2 months ago - Pushed: 12 months ago - Stars: 11 - Forks: 19

BaderLab/cy3d-impl

3D Graph Renderer for Cytoscape using OpenGL

Language: Java - Size: 6.74 MB - Last synced: 2 months ago - Pushed: over 1 year ago - Stars: 8 - Forks: 0

engu-m/actor-network-explorer

Visually explore relationships between actors (who played with who?) using IMDB non-commercial dataset

Language: Python - Size: 119 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

univieCUBE/ScyNet

ScyNet: Visualisation of community metabolic models in Cytoscape

Language: Java - Size: 6.07 MB - Last synced: about 2 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

michaelbushe/cytoscape-angular

Angular component for Ctyoscape graphs.

Language: TypeScript - Size: 1.38 MB - Last synced: 20 days ago - Pushed: 11 months ago - Stars: 16 - Forks: 15

SMRUCC/GCModeller.Cytoscape

GCModeller biological network visualization tools based on the Cytoscape

Language: Visual Basic .NET - Size: 1.78 MB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 3 - Forks: 1

lomska/Visualizing-Global-Trade-Networks

Python script that visualizes international commodity trade networks quickly and beautifully

Language: Python - Size: 26.9 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 6 - Forks: 1

PathwayCommons/cytoscape-sbgn-stylesheet

View biological networks via Cytoscape.js and sbgn-ml

Language: JavaScript - Size: 46 MB - Last synced: 2 months ago - Pushed: over 3 years ago - Stars: 55 - Forks: 27

upsetjs/cytoscape.js-bubblesets

Cytoscape.js Bubblesets plugin

Language: TypeScript - Size: 3.86 MB - Last synced: 25 days ago - Pushed: about 2 months ago - Stars: 26 - Forks: 7

GitPaulo/aritree

visualise your arithmetic expressions

Language: TypeScript - Size: 253 KB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 1 - Forks: 0

adminLTR/Teslab

Multipurpose syntactic analyzer

Language: JavaScript - Size: 681 KB - Last synced: 23 days ago - Pushed: 6 months ago - Stars: 1 - Forks: 0

fslaborg/Cytoscape.NET

.NET interface for Cytoscape.js written in F#

Language: F# - Size: 753 KB - Last synced: about 1 month ago - Pushed: about 1 year ago - Stars: 44 - Forks: 5

idekerlab/cxmateold

A RESTFUL network API proxy service for network algorithms

Language: Go - Size: 29.3 KB - Last synced: 5 months ago - Pushed: almost 7 years ago - Stars: 3 - Forks: 1

stereobooster/cyto-snap

Render graphs on the server side with Cytoscape.js, getting image file as output (using tauri)

Language: JavaScript - Size: 780 KB - Last synced: 2 months ago - Pushed: 5 months ago - Stars: 1 - Forks: 0

leolui2004/dash_cytoscape

Dash Cytoscape to Visualize Relationship between Twitter Accounts

Language: Python - Size: 10.5 MB - Last synced: 6 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

leovan/cytoscape-manual

Cytoscape 中文用户手册 | Cytoscape User Manual (Chinese Version)

Size: 21.2 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 12 - Forks: 5

scaramonche/EuBIC2020_Cytoscape

Repository for workflows created during the Cytoscape hackathon at the EuBIC 2020 developer's meeting.

Language: Jupyter Notebook - Size: 6.8 MB - Last synced: 3 months ago - Pushed: about 4 years ago - Stars: 3 - Forks: 0

lmangani/gun-scape

GunDB Cytoscape Graph Visualizer + Live Editor

Language: JavaScript - Size: 232 KB - Last synced: 25 days ago - Pushed: over 2 years ago - Stars: 61 - Forks: 7

iVis-at-Bilkent/cytoscape.js-layout-service 📦

Web-service on cytoscape.js to layout graphs

Language: JavaScript - Size: 1.35 MB - Last synced: about 1 month ago - Pushed: about 3 years ago - Stars: 9 - Forks: 2

yochannah/cytoscape-intermine

Widget to allow intermine gene interactions to be viewed using cytoscape.js

Language: JavaScript - Size: 6.03 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 4 - Forks: 4

Or3stis/apparatus 📦

A graphical security analysis tool for IoT networks

Language: JavaScript - Size: 73.8 MB - Last synced: about 1 month ago - Pushed: about 5 years ago - Stars: 200 - Forks: 82

peng-ye/MetaPGN

A pipeline for construction and graphical visualization of annotated pangenome networks.

Language: Perl - Size: 40.4 MB - Last synced: 7 months ago - Pushed: over 5 years ago - Stars: 13 - Forks: 5

matthiaskoenig/cy3sbml

cy3sbml: SBML for Cytoscape 3

Language: Java - Size: 326 MB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 11 - Forks: 2

kristiyanto/GUIdock

Graphical GUI for Docker (Bioconductor, R, Cytoscape, NetworkBMA)

Language: Shell - Size: 73.8 MB - Last synced: 7 months ago - Pushed: over 7 years ago - Stars: 10 - Forks: 8

geneontology/gocam-sif-pyexport

Export GO-CAMs to SIF (Python)

Language: Python - Size: 984 KB - Last synced: 7 months ago - Pushed: about 3 years ago - Stars: 5 - Forks: 1

cas-bioinf/genexpi

Gene Network Inference from Expression Time Series

Language: HTML - Size: 158 MB - Last synced: 7 months ago - Pushed: over 5 years ago - Stars: 2 - Forks: 1

ilwookkim/cgNetwork

Gene co-expression network analysis

Language: R - Size: 2.7 MB - Last synced: 7 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

chadilukito/cyRestPHP

PHP's wrapper for Cytoscape's cyRest API

Language: PHP - Size: 15.6 KB - Last synced: 7 months ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

aszilagyi/tabnetviz

Table-based network visualizer

Language: Python - Size: 947 KB - Last synced: 7 months ago - Pushed: about 1 year ago - Stars: 13 - Forks: 4

YoussefEssDS/Social-network-mining-and-analysis

Mining Github for contributors at the Tensorflow repo and analysis of followship relations.

Language: Jupyter Notebook - Size: 14.4 MB - Last synced: 7 months ago - Pushed: over 3 years ago - Stars: 2 - Forks: 0

stereobooster/cyto-nodejs

Render graphs on the server side with Cytoscape.js, getting image file as output (using jsdom)

Language: JavaScript - Size: 144 KB - Last synced: 15 days ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

MarkSeliverstov/MFF-web-team-project

Web Crawler | Team project for advanced web programming

Language: TypeScript - Size: 2.89 MB - Last synced: 2 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

sbl-sdsc/neo4j-ipycytoscape

Demo of Neo4j graph visualization with the ipycytoscape Jupyter Lab extension

Language: Jupyter Notebook - Size: 136 KB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 3 - Forks: 5

tjohnston-softdev/maze-graph-pathfinding 📦

Node JS command line application used to perform pathfinding on mazes.

Language: JavaScript - Size: 493 KB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 1 - Forks: 0

jhk0530/shinyCyJS

cytoscape.js R binding library for shiny

Language: JavaScript - Size: 1.17 MB - Last synced: 13 days ago - Pushed: 8 months ago - Stars: 8 - Forks: 5

TargetPackage/cytoscape.js-supportimages Fork of jhonatandarosa/cytoscape.js-supportimages

A plugin that enables support images on cytoscape.js

Language: JavaScript - Size: 249 KB - Last synced: 8 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

proteomicsyates/ProteinClusterQuant

Protein Cluster Quant is a Java software for the analysis of complex proteomics samples (quantitative or not). It helps to reduce the redundancy of the peptide-to-protein relationship and to visualize the results in a bipartite network (Cytoscape).

Language: Python - Size: 319 MB - Last synced: 2 months ago - Pushed: 9 months ago - Stars: 5 - Forks: 3

mrjoh3/cytoscape

An R HTMLWidget wrapper for Cytoscape.js

Language: JavaScript - Size: 3.6 MB - Last synced: 9 months ago - Pushed: over 3 years ago - Stars: 6 - Forks: 2

sondalex/dash-bipartite

Dash-Bipartite contains tools to create two columns graphs/bipartite graphs dash components.

Language: Python - Size: 27.3 KB - Last synced: 10 months ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 0

mferri17/amazon-reviews-sentiment-network-analysis

Python Sentiment Analysis on Amazon Reviews with NLP, Machine Learning prediction models and ABSA. Basic Network Analysis and some experiments with Collaborative Filtering.

Language: Jupyter Notebook - Size: 86.2 MB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

lelimat/cyrest_competition

Network data analysis using data from Youtube using Python + Cytoscape (CyREST)

Language: HTML - Size: 16.3 MB - Last synced: 10 months ago - Pushed: almost 7 years ago - Stars: 2 - Forks: 0

catabia/inter-tools

Language: Python - Size: 12.7 MB - Last synced: 10 months ago - Pushed: almost 7 years ago - Stars: 1 - Forks: 1

picorana/sparqling

Visual tool for SPARQL queries on graphol graphs

Language: CoffeeScript - Size: 4.05 MB - Last synced: 10 months ago - Pushed: over 5 years ago - Stars: 9 - Forks: 2

iliazeus/fedimap

A simple utility to map out the social graph of ActivityPub instances

Language: JavaScript - Size: 61.5 KB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 1 - Forks: 0

mariadsn/CyEnGNet-APP

The CyEnGNet-App is a plugin for Cytoscape. It implements the EnGNet algorithm, a powerful network analysis method. This app allows users to directly generate the output network in Cytoscape.

Language: Java - Size: 8.73 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

minefuto/dash-cytoscape-elements

Python object for dash-cytoscape elements

Language: Python - Size: 67.4 KB - Last synced: 19 days ago - Pushed: 10 months ago - Stars: 1 - Forks: 0

kozo2/cyautoworkshop

BioC Asia 2021 workshop "Cytoscape automation with RCy3"

Language: Jupyter Notebook - Size: 677 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 3 - Forks: 0

MaayanLab/Graph-DR

Benchmarks of dimensionality reduction algorithms

Language: Jupyter Notebook - Size: 31.1 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 2 - Forks: 3

marclegeay/omics-visualizer

Omics Visualizer App for Cytoscape 3

Language: Java - Size: 94.3 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 3 - Forks: 2

faridfr/Optimizing_Finite_Automata

PHP script with web interface that can optimize & draw your finite automata

Language: PHP - Size: 1.63 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 14 - Forks: 0

sandipwane/process-topology

A process topology using cytoscape-js

Language: JavaScript - Size: 6.13 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

jespersm/cytoscape-gremlin

Cytoscape App for connecting to a Gremlin/TinkerPop Server

Language: Java - Size: 122 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 11 - Forks: 5

sadiqDohad/wat-secretome-analysis

Tabula Muris Senis Transcriptomic Secretome Database Generation + White Adipose Depot Analysis

Size: 26.4 MB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

Abhi5h3k/graphml-viewer

Quick and simple web based solution to visualize GraphMl network diagrams

Language: TypeScript - Size: 1.94 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 12 - Forks: 0

gianluca-pepe/GrapholScape 📦

Web viewer for ontologies written in Graphol

Language: JavaScript - Size: 4.05 MB - Last synced: 7 months ago - Pushed: about 4 years ago - Stars: 3 - Forks: 3

ebeshero/DHClass-Hub 📦

a repository to help introduce and orient students to the GitHub collaboration environment, and to support DH classes.

Language: HTML - Size: 56.1 MB - Last synced: 9 months ago - Pushed: almost 4 years ago - Stars: 27 - Forks: 27

snikproject/ciono 📦

Ontologiebasierte Navigation für CION

Language: Java - Size: 45.9 KB - Last synced: 12 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

Hoogkamer/MetroMap

Interactive MetroMap for process/workflow descriptions

Language: JavaScript - Size: 2.25 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 2 - Forks: 0

LiuYuancheng/Cytoscape_2_Json

We want to convert some cystoscape node-edge graph file (under pkl format) to JSON format file which can be used by other program.

Language: Python - Size: 155 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 2 - Forks: 0

vga-usask/CodeNetVis Fork of BJNick/CytoscapeMagneticLayout

An app for Cytoscape 3.9.1+ to visualize software dependency graph.

Language: Java - Size: 37.4 MB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

SAP/sap-hana-plugin-for-cytoscape

Connect Cytoscape and SAP HANA to enable import, export and visualization of graph data stored in SAP HANA.

Language: Java - Size: 1 MB - Last synced: about 2 months ago - Pushed: 8 months ago - Stars: 3 - Forks: 4

hanzhi713/Discrete-Math-Tools

Implementation and visualization of some number theory and graph theory algorithms

Language: JavaScript - Size: 5.88 MB - Last synced: about 1 year ago - Pushed: almost 5 years ago - Stars: 8 - Forks: 3

dennishnf/project-arxiv-citation-network

This project involved the analysis of the ArXiv citation network.

Language: Jupyter Notebook - Size: 90.6 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 5 - Forks: 0

EBI-IntAct/IntActApp

IntAct App is a Cytoscape Application dedicated to the creation of molecular interaction networks, based on the IntAct database

Language: Java - Size: 7.5 MB - Last synced: 2 months ago - Pushed: 12 months ago - Stars: 1 - Forks: 0

vanHeemstraSystems/mindmap-management-gui

Mindmap Management GUI

Language: JavaScript - Size: 1.11 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

marcodpt/graph

A graph element based on cytoscape.js

Language: JavaScript - Size: 9.77 KB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

csmc-vaneykjlab/pine

A command line and GUI tool for visualizing protein-protein interaction networks.

Language: Python - Size: 21 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

crosshj/sandbox

experiments with react, flux, redux, whatever-dux, not-even-dux

Language: JavaScript - Size: 1.02 MB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

JosePedroDias/parenthood

a simple way of describing relationships. outputs those of those to graphviz diagrams

Language: JavaScript - Size: 1.91 MB - Last synced: 16 days ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

sysbiolux/IDARE

IDARE - Multiomics Visualisation in Cytoscape

Language: Java - Size: 3.36 MB - Last synced: 7 months ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 1

yuichiroaoki/cytoscapejsonexample

Language: Python - Size: 218 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

SimonLarsen/cytomcs

A maximum common subgraph tool for Cytoscape

Language: Java - Size: 39.1 KB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 5 - Forks: 2

BiGCAT-UM/cyNeo4J_DSMN

Language: Java - Size: 66.4 KB - Last synced: over 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 2

cannin/shiny_network

Example R Shiny application cytoscape/cyjShiny

Language: R - Size: 842 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

fixpoint/cytoscape-anywhere-panning

Allow panning from nodes/edges

Language: HTML - Size: 342 KB - Last synced: 21 days ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

lianmafutra/covid19_tracking

Language: JavaScript - Size: 186 KB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

fixpoint/cytoscape-effective-area

Invoke fit/center with an effective area without changing the canvas size

Language: HTML - Size: 186 KB - Last synced: 28 days ago - Pushed: about 5 years ago - Stars: 1 - Forks: 0

fixpoint/cytoscape-dblclick

Add dblclick event to cytoscape.js

Language: HTML - Size: 18.1 MB - Last synced: 19 days ago - Pushed: about 5 years ago - Stars: 3 - Forks: 2

matthiaskoenig/cy2sbml

cy2sbml: SBML for Cytoscape 2

Language: HTML - Size: 162 MB - Last synced: about 1 year ago - Pushed: about 8 years ago - Stars: 2 - Forks: 0

Braden1996/games-of-argumentation

DISCO (DIScussion COmputation) is an online implementation of the Grounded Discussion Game and the Preferred Discussion Game.

Language: JavaScript - Size: 274 KB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 1 - Forks: 0

marclegeay/cytoscape-uni

Small Cytoscape App to give unique identifiers to nodes, persistent within a session.

Language: Java - Size: 11.7 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

pybel/pybel-cx

A PyBEL extension for interconversion with CX

Language: Python - Size: 55.7 KB - Last synced: about 2 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

cxmate/cxmate

A RESTFUL network API proxy service for CX

Language: Go - Size: 16 MB - Last synced: 11 months ago - Pushed: over 6 years ago - Stars: 2 - Forks: 5