ZarnackGroup/BindingSiteFinder

Package for the definition of biniding sites for iCLIP data

Language: R - Size: 9.87 MB - Last synced at: 5 days ago - Pushed at: about 2 months ago - Stars: 6 - Forks: 0

chaolinzhanglab/PlotPWM.jl

Plot position weight matrices (PWM)

Language: Julia - Size: 860 KB - Last synced at: 4 days ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0

SoniaRuiz/splicing-accuracy-manuscript

Code for the manuscript "Splicing accuracy varies across human introns, tissues and age".

Language: R - Size: 1.7 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

zavolanlab/bindz-rbp

RBP module for bindz, a bioinformatics tool to detect regulators' binding sites on RNA sequences.

Language: Roff - Size: 789 KB - Last synced at: 5 months ago - Pushed at: about 3 years ago - Stars: 7 - Forks: 1

kchu25/SeqLogo.jl

Plot position weight matrices (PWM)

Language: Julia - Size: 276 KB - Last synced at: 4 days ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

JingQiChong/nf_CRACpipeline

A Nextflow workflow for processing and analyzing CRAC data

Language: Nextflow - Size: 55.7 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 1 - Forks: 1

kkrismer/transite

RNA-binding protein motif analysis

Language: R - Size: 1.48 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 10 - Forks: 1

zavolanlab/RCRUNCH

Workflow for automated (e)CLIP analysis. From raw fastq to peak calling and motif analysis.

Language: Python - Size: 17.4 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 6 - Forks: 0

rosbashlab/TRIBE

Language: Perl - Size: 4.45 MB - Last synced at: over 1 year ago - Pushed at: about 7 years ago - Stars: 3 - Forks: 5

rosbashlab/HyperTRIBE

Software for updated version of TRIBE

Language: Perl - Size: 63.3 MB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 6 - Forks: 6

bioinformatics-torvergata/BRIO

BRIO: a web server for RNA sequence and structure motif scan (https://doi.org/10.1093/nar/gkab400)

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sivkri/RBP-Data-Processing

RBP-Data-Processing is a repository containing R code for processing RNA-binding protein (RBP) datasets. The code imports the data table, performs data cleaning and transformation operations, and saves the processed dataset. It provides a convenient and reproducible workflow for analyzing RBP data obtained from external sources.

Language: R - Size: 991 KB - Last synced at: about 2 months ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

matteocereda/RNAmotifs

RNAmotifs is an integrated R, C++, python softwares that evaluates the sequence around differentially regulated alternative exons to identify clusters of short sequences, referred to as multivalent RNA motifs, bound by RNA-binding proteins

Language: C++ - Size: 246 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 8 - Forks: 2

annadalmolin/CRAFT

CRAFT is a computational pipeline that predicts circRNA sequence and molecular interactions with miRNAs and RBPs, along with their coding potential. CRAFT provides a comprehensive graphical visualization of the results, links to several knowledge databases, extensive functional enrichment analysis and combination of predictions for different circRNAs. CRAFT is a useful tool to help the user explore the potential regulatory networks involving the circRNAs of interest and generate hypotheses about the cooperation of circRNAs into the regulation of biological processes.

Language: RMarkdown - Size: 3.01 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 7 - Forks: 1

mRcSchwering/RBDpredict

R package for unbiased enigm RNA-binding protein (RBP) prediction based on shrinkage discriminant analysis. Enigm RBPs have been found to make up for one half of all RBPs.

Language: R - Size: 19.2 MB - Last synced at: about 2 years ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 0