protein-rna-interactions 10 protein-dna-interactions 4 rna 3 binding-sites 2 dna 2 motifs 2 position-weight-matrix 2 rna-binding-proteins 2 tfbs 2 regression-model 1 pytorch 1 protein-expression 1 mrna 1 fine-tuning 1 cite-seq 1 autoencoder-neural-network 1 autoencoder 1 cross-modality 1 transcription-factor-binding-site 1 single-cell-analysis 1 torch 1 interactome 1 machine-learning-algorithms 1 protein-bioinformatics 1 bioinformatics 1 bioinformatics-tool 1 machine-learning 1 prediction 1 python3 1 bioconductor 1 cage 1 coverage-distribution 1 go 1 interactive-plots 1 modification 1 motif-discovery 1 msigdb 1 par-clip 1 reporting 1 graph-neural-netowrks 1 protein-language-model 1 biomolecular-structures 1 deep-learning 1 language-model 1 iclip 1 icount 1 pwm 1 transcription-factor-binding-sites 1