GitHub topics: msigdb
GSEA-MSigDB/GSEA.jl
Julia implementation of the next generation GSEA 🏔️
Language: Julia - Size: 190 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 32 - Forks: 3
igordot/msigdbr
MSigDB gene sets for multiple organisms in a tidy data format
Language: R - Size: 77.4 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 74 - Forks: 14
greenelab/BioBombe
BioBombe: Sequentially compressed gene expression features enhances biological signatures
Language: Jupyter Notebook - Size: 2.28 GB - Last synced at: 27 days ago - Pushed at: 10 months ago - Stars: 65 - Forks: 26
person-c/r4msigdb
Query on the MSigDB
Language: R - Size: 10.2 MB - Last synced at: 9 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0
ToledoEM/msigdf Fork of stephenturner/msigdf
Molecular Signatures Database (MSigDB) in a data frame
Language: HTML - Size: 239 MB - Last synced at: 9 months ago - Pushed at: about 1 year ago - Stars: 23 - Forks: 6
BIMSBbioinfo/RCAS
R package for the RNA Centric Annotation System (RCAS)
Language: R - Size: 14.6 MB - Last synced at: 6 months ago - Pushed at: about 1 year ago - Stars: 6 - Forks: 3
Bishop-Laboratory/correlationAnalyzeR
Generate Novel Insights from Gene Correlation Data
Language: R - Size: 86.1 MB - Last synced at: 12 months ago - Pushed at: almost 3 years ago - Stars: 8 - Forks: 6
oganm/MSigDB
Molecular Signatures Database as a list
Language: R - Size: 138 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 11 - Forks: 0
tdayris-perso/vcf-annotate-snpeff-snpsift 📦
Snakemake workflow designed to annotate VCF files withe SnpEff / SniSift
Language: Python - Size: 11.4 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 2 - Forks: 2
genepattern/TCGA.SampleSelection
TCGA.SampleSelection wrapper module for GenePattern.
Language: R - Size: 10.5 MB - Last synced at: 2 months ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 1
bio2bel/msig
Integration of pathway-related information from MSigDB in BEL
Language: Python - Size: 66.4 KB - Last synced at: 13 days ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 0
ACastanza/seqformat
RNA-seq Preprocessing for GSEA
Language: R - Size: 6.04 MB - Last synced at: 10 days ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0
rgranit/msigDB-To-Geneset
Script that converts MSigDB '.gmt' files into a tab-delimited gene-set ready for use in 'Genomica'
Language: Perl - Size: 3.91 KB - Last synced at: about 2 years ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0
