ELTEbioinformatics/mulea Fork of koralgooll/MulEA

mulea - an R package for enrichment analysis using various ontologies and empirical FDR correction

Language: R - Size: 296 MB - Last synced: about 7 hours ago - Pushed: about 8 hours ago - Stars: 10 - Forks: 1

KwatMDPhD/GSEA.jl

The official command-line program for gene-set-enrichment analysis (GSEA) 🏔️

Language: Julia - Size: 180 MB - Last synced: 6 days ago - Pushed: 6 days ago - Stars: 21 - Forks: 2

rcastelo/GSVA

Gene set variation analysis

Language: R - Size: 5.93 MB - Last synced: 6 days ago - Pushed: 7 days ago - Stars: 164 - Forks: 40

tanghaibao/goatools

Python library to handle Gene Ontology (GO) terms

Language: Python - Size: 57.5 MB - Last synced: 10 days ago - Pushed: 11 days ago - Stars: 727 - Forks: 209

theislab/diffxpy

Differential expression analysis for single-cell RNA-seq data.

Language: Python - Size: 1.71 MB - Last synced: about 1 month ago - Pushed: 12 months ago - Stars: 171 - Forks: 23

malhamdoosh/EGSEA

This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.

Language: R - Size: 5.6 MB - Last synced: 2 months ago - Pushed: 4 months ago - Stars: 9 - Forks: 4

krassowski/gsea-api

Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)

Language: Python - Size: 162 KB - Last synced: 6 days ago - Pushed: about 1 year ago - Stars: 14 - Forks: 2

xzhoulab/iDEA-Analysis

Language: R - Size: 12.1 MB - Last synced: 2 months ago - Pushed: almost 4 years ago - Stars: 7 - Forks: 2

bio2bel/msig

Integration of pathway-related information from MSigDB in BEL

Language: Python - Size: 66.4 KB - Last synced: 3 months ago - Pushed: over 3 years ago - Stars: 2 - Forks: 0

genescf/GeneSCF

Gene Set Clustering based on Functional annotation

Language: Perl - Size: 4.53 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 21 - Forks: 5

euxhenh/grinch

A library for differential expression and gene set enrichment analysis based on hydra and pydantic.

Language: Python - Size: 318 KB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 2 - Forks: 0

fcomitani/tapir

Transcriptiome Analysis in Python Imported from R

Language: Python - Size: 9.11 MB - Last synced: 7 days ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

kn-bibs/pathways-analysis

Testing, development environment for a new project of KN BIBS

Language: Python - Size: 147 KB - Last synced: 7 months ago - Pushed: over 5 years ago - Stars: 2 - Forks: 10

Acare/hacksig

A Tidy Framework to Hack Gene Expression Signatures

Language: R - Size: 6.52 MB - Last synced: 6 months ago - Pushed: over 1 year ago - Stars: 17 - Forks: 4

NKI-CCB/flexgsea-r

Flexible gene set enrichment analysis

Language: R - Size: 90.8 KB - Last synced: 3 days ago - Pushed: over 2 years ago - Stars: 10 - Forks: 2

DBRetina/DBRetina

DBRetina python package

Language: C++ - Size: 19.7 MB - Last synced: 28 days ago - Pushed: 3 months ago - Stars: 1 - Forks: 1

dpohanlon/brioche

Bayesian tests for set enrichment :bread:

Language: Python - Size: 2.19 MB - Last synced: 9 days ago - Pushed: 9 months ago - Stars: 1 - Forks: 0

epigen/enrichment_analysis

A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, and GSEApy.

Language: Python - Size: 1.75 MB - Last synced: 9 months ago - Pushed: 10 months ago - Stars: 10 - Forks: 0

varemo/piano

piano - An R/Bioconductor package for gene set analysis

Language: R - Size: 2.42 MB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 12 - Forks: 4

aedanr/PhD-Project-2.4

Assessing dIfferential expression, dispersion, distribution analyses on TCGA tumour-normal RNA-seq datasets

Language: R - Size: 232 KB - Last synced: 9 months ago - Pushed: over 3 years ago - Stars: 2 - Forks: 0

KatrionaGoldmann/omicAnnotations

Package to gather gene information, annotations, and functions

Language: R - Size: 914 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 1

sartorlab/chipenrich.data

Experimental version of data package associated with chipenrich

Language: R - Size: 479 MB - Last synced: 7 months ago - Pushed: 8 months ago - Stars: 1 - Forks: 2

NicolasH2/gseaCondenser

condense GSEA terms

Language: R - Size: 1.16 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

asusete/askoR Fork of askomics/askoR

AskoR pipeline: analysis of gene expression data, using edgeR.

Language: R - Size: 34 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 2 - Forks: 0

ok-gitr/geneSetVis

gene-set enrichment visualization.

Language: R - Size: 84.8 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0